PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009595181.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 843aa MW: 92954.9 Da PI: 6.1855 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.9 | 4.4e-19 | 338 | 437 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ +++ + ++++d +g++W++++++ +++s++yvl+ G + +L++gD+v+F++++ +++ XP_009595181.1 338 FEKVLSASDAGRIGRLVLPKACAEAYfpPINQSDGLPIRIQDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVTFSRID-PGGK 430 99**************************556666778***************9989999999***9.********************887.7887 PP .EEEEE- CS B3 92 lvvkvfr 98 lv+++++ XP_009595181.1 431 LVMGFRK 437 8888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-29 | 335 | 441 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.89E-21 | 335 | 438 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.15E-24 | 336 | 437 | No hit | No description |
Pfam | PF02362 | 2.1E-16 | 338 | 437 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.237 | 338 | 439 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.1E-22 | 338 | 438 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 13.76 | 543 | 597 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 3.7E-10 | 548 | 594 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 843 aa Download sequence Send to blast |
MGFLDLEILN MGSMICMNEV CRKTTSSEWK KGWSLKSGGF ANLCYNCGSA FENLSFCETF 60 HMGDSGWREC KMCGKHLHCG CIASKYLFEY LDFGGVGCIS CARCLDDHSM RPMQVPADDF 120 RDSAFGTNFI QPLHVEKGVD KTNFDKGRLP TVNNIMEISE PGQPFQSQKD ENNVSLGKTK 180 QEKVLPVGDV STCFSNLNQQ SIASLFREQD NSKPNQGVKE MYDTTNQPSL DFSLSTPVGC 240 SSSGLSFPDG GVEGREHEKT PFQQGLRTRH ILLKPLKPSP SFGSDSNKEL PSQTRIARPP 300 AEGRGGRNQL LPRYWPRITD QELCQLSGDL NSAIVPLFEK VLSASDAGRI GRLVLPKACA 360 EAYFPPINQS DGLPIRIQDI KGKEWTFQFR FWPNNNSRMY VLEGVTPCIQ NMQLQAGDTV 420 TFSRIDPGGK LVMGFRKATN SVETQDPQSS HLPDGSGSAD TSFTGLTENL NKKTTNIGSK 480 NKRLLMHADD AMELRITWEE SQELLRPPPT TQPTILVIED CEFEAYDEPP VFGKQTIFTS 540 RPSGDQEQWA QCDSCSKWRR LPMHVLLPPK WTCSDNIWDS NSFLYRCSCS APEEIKAKEL 600 EAFFRVSKGH KRQKIAGKNE DCEPSGLNAL ATVAVLGDSI SDLGEPLVGA TTKHPRHRPG 660 CTCIVCIQPP SGKGKHQPTC KCNACLSAER RFKTLMLRKK KKQSEREAEV AQAKDQVPPK 720 DGSETDGASG AELMMQTSHS ENERNTNGDH MEKVGAGKGQ LDLNCHPNRE DEMLIEAAAG 780 ISMTSLINAA DLPLDMYQTQ NGLATLDKCL LSLATAGSEG QQPDNGCVRP ADAQVQENNG 840 DNG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 4e-69 | 316 | 445 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009595178.1 | 0.0 | PREDICTED: B3 domain-containing transcription repressor VAL1-like isoform X1 | ||||
Swissprot | Q6Z3U3 | 0.0 | Y7797_ORYSJ; B3 domain-containing protein Os07g0679700 | ||||
TrEMBL | A0A1J6I6X9 | 0.0 | A0A1J6I6X9_NICAT; B3 domain-containing protein | ||||
STRING | XP_009595178.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30470.1 | 0.0 | high-level expression of sugar-inducible gene 2 |
Publications ? help Back to Top | |||
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