PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009595153.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 394aa MW: 44295.4 Da PI: 7.6945

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009595153.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	113.9	1.7e-35	50	193	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 lp+G++F+Ptd+el+ e+L++kv +kk + + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+++ XP_009595153.1 50 LPAGVKFDPTDQELI-EHLEAKVVSKKeskshplI---DefipTIEGEdGICYTHPERLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecd 139 799**********.9999999888856665443...143334766646******.555666799**************7333455 PP NAM 80 ....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l XP_009595153.1 140 lqggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 193 5544778********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	16	No hit	No description
SuperFamily	SSF101941	4.32E-39	46	212	IPR003441	NAC domain
PROSITE profile	PS51005	33.478	50	212	IPR003441	NAC domain
Pfam	PF02365	3.8E-16	51	193	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MNKSSSSHQL GSISSCDLID AKLEEHQLCG SKQCPGCGQK LEGKPDWVGL PAGVKFDPTD 60 QELIEHLEAK VVSKKESKSH PLIDEFIPTI EGEDGICYTH PERLPGVTRD GLSRHFFHRP 120 SKAYTTGTRK RRKIQTECDL QGGETRWHKT GKTRPVMVNG KQKGCKKILV LYTNFGKNRK 180 PEKTNWVMHQ YHLGQNEEER EGELVVSKIF YQTQPRQCNT TSWSNNERSI NTGDHSGSGS 240 CSSSKEINTV NPISHSHRDE LSAAVGAAMS SNYNTVNIQR LKADHFSFLP FRRNFDEAGI 300 MDAETSMARR DDQAVGTCEE PESQRQHPHH VTHESSHQHQ HQNQIATTTA FNISRPSPPI 360 SAIIAPPPPL HHTSVILDHD SFHVPTNYNF QVLF

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MNKSSSSHQL GSISSCDLID AKLEEHQLCG SKQCPGCGQK LEGKPDWVGL PAGVKFDPTD  60
QELIEHLEAK VVSKKESKSH PLIDEFIPTI EGEDGICYTH PERLPGVTRD GLSRHFFHRP  120
SKAYTTGTRK RRKIQTECDL QGGETRWHKT GKTRPVMVNG KQKGCKKILV LYTNFGKNRK  180
PEKTNWVMHQ YHLGQNEEER EGELVVSKIF YQTQPRQCNT TSWSNNERSI NTGDHSGSGS  240
CSSSKEINTV NPISHSHRDE LSAAVGAAMS SNYNTVNIQR LKADHFSFLP FRRNFDEAGI  300
MDAETSMARR DDQAVGTCEE PESQRQHPHH VTHESSHQHQ HQNQIATTTA FNISRPSPPI  360
SAIIAPPPPL HHTSVILDHD SFHVPTNYNF QVLF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00460	DAP	Transfer from AT4G29230	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	2e-97	HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBank	HG975517	2e-97	HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009595153.1	0.0	PREDICTED: NAC domain-containing protein 101-like isoform X2
Refseq	XP_016471015.1	0.0	PREDICTED: NAC domain-containing protein 101-like isoform X2
Swissprot	Q9M0F8	1e-151	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A1S4A325	0.0	A0A1S4A325_TOBAC; NAC domain-containing protein 101-like isoform X2
STRING	XP_009595150.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-136	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]