PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009595017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | E2F/DP | ||||||||
Protein Properties | Length: 345aa MW: 38051.3 Da PI: 7.755 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 87.2 | 1.2e-27 | 88 | 170 | 2 | 71 |
E2F_TDP 2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 ++++Lr++++k ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg XP_009595017.1 88 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfsdptnshessdqrqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 170 689********...*****999*******************************************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF009404 | 8.8E-128 | 3 | 345 | IPR015648 | Transcription factor DP |
Gene3D | G3DSA:1.10.10.10 | 2.2E-46 | 83 | 175 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 3.6E-35 | 87 | 170 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 6.3E-25 | 89 | 170 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.99E-21 | 90 | 171 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
CDD | cd14458 | 7.23E-43 | 176 | 278 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 1.75E-42 | 177 | 291 | No hit | No description |
SMART | SM01138 | 5.3E-71 | 177 | 343 | IPR014889 | Transcription factor DP, C-terminal |
Pfam | PF08781 | 8.5E-43 | 178 | 315 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042023 | Biological Process | DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MVNNLEEGGK NPSEVSRRSW GPTTTVSGQS VSTSGSVGSP SAVATPGSEN TFVRLNNLDI 60 HADDAASQGA AANRKKKRGQ RATGGDKSGR GLRQFSMKVC EKVESKGRTT YNEVADELVA 120 EFSDPTNSHE SSDQRQYDEK NIRRRVYDAL NVLMAMDIIS KDKKEIQWKG LPRTDANDIE 180 ELKAERLSLR NRIEKKAAYL EELEEQYVGL QNLIKRNKQL YGSGNAPSGG VALPFILVQT 240 RPHATVEVEI SEDMQLVHFD FNSTPFELHD DNYVLKAMKF CGRQKNDVDA QNVSADGAEG 300 SSSSMANIFQ HQISHTSVSN TPGRRPTPTS PPLPGILKAR IKHEH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 9e-40 | 81 | 176 | 1 | 94 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC684558 | 0.0 | KC684558.1 Solanum lycopersicum transcription factor DP/E2 dimerization partner-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009595017.1 | 0.0 | PREDICTED: transcription factor-like protein DPB isoform X1 | ||||
Refseq | XP_009595018.1 | 0.0 | PREDICTED: transcription factor-like protein DPB isoform X1 | ||||
Refseq | XP_016484172.1 | 0.0 | PREDICTED: transcription factor-like protein DPB isoform X1 | ||||
Refseq | XP_016484236.1 | 0.0 | PREDICTED: transcription factor-like protein DPB isoform X1 | ||||
Swissprot | Q9FNY2 | 1e-155 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | A0A1S4B5T6 | 0.0 | A0A1S4B5T6_TOBAC; transcription factor-like protein DPB isoform X1 | ||||
STRING | XP_009595017.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6265 | 24 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 1e-129 | Transcription factor DP |