PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009594814.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TCP | ||||||||
Protein Properties | Length: 247aa MW: 25894.8 Da PI: 8.5116 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 122.4 | 5.1e-38 | 29 | 121 | 3 | 89 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.....k 89 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s ++s+ +ss + k XP_009594814.1 29 VKKPPAKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFStLSVSLRNSSVSSSLSapldyK 121 79******************************************************************8886444443333322222334321 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 27.675 | 34 | 88 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.4E-34 | 34 | 125 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MSTSVEANGG ATLTQQHSSD AGNSGALVVK KPPAKDRHSK VDGRGRRIRM PIVCAARVFQ 60 LTRELGHKSD GQTIEWLLRQ AEPSIIAATG TGTIPASFST LSVSLRNSSV SSSLSAPLDY 120 KSSSQPSISP PPFLLGKRLR PEDDDGSGDK DDASNGATVV GPTAGFWAVP ARPDFGQVWS 180 FAPPPPPPEM VAPTHSSAAR FLQQQMGEES AARLGNYFPI AQGHLNLLAS LSGSAPPSSG 240 RRDDDGN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009594814.1 | 1e-179 | PREDICTED: transcription factor TCP7-like | ||||
Swissprot | Q9FMX2 | 1e-82 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A1J6JAK1 | 1e-150 | A0A1J6JAK1_NICAT; Transcription factor tcp7 | ||||
STRING | XP_009594814.1 | 1e-178 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3951 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 1e-65 | TCP family protein |