PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009594752.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 166aa    MW: 18927.7 Da    PI: 9.0217
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009594752.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.0003578100123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ Cg+ Fs    L  H+r+H
  XP_009594752.1  78 HECSFCGEEFSLGQALGGHMRKH 100
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.77E-735100No hitNo description
PROSITE profilePS501579.8273764IPR007087Zinc finger, C2H2
PfamPF139123.2E-113761IPR007087Zinc finger, C2H2
SMARTSM003550.83759IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803959IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-474100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.0E-778101IPR007087Zinc finger, C2H2
PROSITE profilePS501579.68178100IPR007087Zinc finger, C2H2
SMARTSM003550.07978100IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MTIKRSREED QLTVETLAMA NCVNILEKNS SLARRLFECR TCKKQFESFQ ALGGHRASHK  60
KPKLHSTADP IKPNKKKHEC SFCGEEFSLG QALGGHMRKH RYKLGELQKQ KQQDSDDNSA  120
GEVVETTEKK ISGTEKALFL DLNMTPYENE LMLGIIPLRV VQHSWL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009594752.11e-122PREDICTED: zinc finger protein ZAT11-like
RefseqXP_016508475.11e-122PREDICTED: zinc finger protein ZAT11-like
TrEMBLA0A1S4D4X41e-121A0A1S4D4X4_TOBAC; zinc finger protein ZAT11-like
STRINGXP_009594752.11e-121(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.17e-31C2H2 family protein