PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009594710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 276aa MW: 32219.8 Da PI: 6.1768 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47 | 6e-15 | 20 | 67 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l+ ++ ++G +W+ +r g+ R++k+c++rw +yl XP_009594710.1 20 KGAWSPEEDQKLKSYIMRYGIWNWSHMPRFAGLSRSGKSCRLRWMNYL 67 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 44.9 | 2.7e-14 | 73 | 118 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE e ++ ++lG++ W+ Iar+++ gRt++ +k++++++l XP_009594710.1 73 RGPFSVEERETVIKMYQELGNR-WSEIARRLP-GRTDNKVKNFFHTHL 118 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.948 | 15 | 67 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-21 | 15 | 70 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.5E-28 | 18 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-12 | 19 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-13 | 20 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.95E-9 | 22 | 67 | No hit | No description |
PROSITE profile | PS51294 | 21.101 | 68 | 122 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-23 | 71 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-14 | 72 | 120 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-12 | 73 | 118 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.50E-9 | 75 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MPSVPPQQQQ KSTNMEEIKK GAWSPEEDQK LKSYIMRYGI WNWSHMPRFA GLSRSGKSCR 60 LRWMNYLRPD VKRGPFSVEE RETVIKMYQE LGNRWSEIAR RLPGRTDNKV KNFFHTHLKK 120 HFGLKYDAPL KSTTNGARSN KRVLKKTKGN ERTNVEKRSP DHVSSSDSNS IITCEENQMM 180 DVTMNLYQTD GDCYNVVDQP NIEMEISPVI LESNPDDGDT YNSNCQQLHD QFEYSHDISE 240 YFSSFDSDGQ FDMSSSWFDV LWDAETSDFF REVITS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-23 | 17 | 120 | 24 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 5e-32 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. | |||
GenBank | HG975515 | 5e-32 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009594710.1 | 0.0 | PREDICTED: transcription factor WER-like isoform X1 | ||||
TrEMBL | A0A1S3Y0R7 | 0.0 | A0A1S3Y0R7_TOBAC; transcription factor WER-like | ||||
STRING | XP_009594710.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 1e-45 | myb domain protein 14 |