PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009594671.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 583aa MW: 65002.5 Da PI: 7.0126 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 426.5 | 2.1e-130 | 213 | 582 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL++cA+a+++++l +l+a+ ++ +s +gdp+qRl ay++e+L ar s++++y+al+++e + + l+++++++e++P+lkf++ XP_009594671.1 213 LKQLLIACARALAENKLDDFGSLIAKARNAVSITGDPIQRLGAYIVEGLVARKEASGTNIYRALRCKEPA---GRDLLSYMQILYEICPYLKFGY 304 689******************************************************************9...9********************* PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 ++aN aI ea +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+ + + l +gerLa++ +++++p+ef++ v + XP_009594671.1 305 MAANGAIAEACRNEDRIHIIDFQIAQGTQWLTLLQALAARPSGAPHVRITGIDDPVSKyaRGDGLTLVGERLAEVSKKFNIPVEFHA-VPVFAPE 398 *******************************************************999999**************************.6888999 PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++ ++L+v+pgEalaVn+ l lh+++desv+++++rde+L++vkslsPkvv++veqe+++n+++F+ rfleal+yy a+f+s++++l r+ +eri XP_009594671.1 399 VTRDMLDVRPGEALAVNFPLVLHHTPDESVDVTNPRDELLRMVKSLSPKVVTLVEQESNTNTAPFFPRFLEALDYYCAMFESIDVTLERDRKERI 493 *********************************************************************************************** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +vE+++l+r+ivn++aceg+er+erhe l+kW+ r+++aGF+++pls+++++ +k+llr ++ + y++ e++g+++lgWkdr+L+s+SaW XP_009594671.1 494 NVEQHCLARDIVNIIACEGKERVERHELLGKWKLRFTMAGFRQYPLSSYVNSVIKSLLRCYS-EHYTLVEKDGAMLLGWKDRNLISASAW 582 **********************************************************9999.66************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.857 | 187 | 564 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.2E-128 | 213 | 582 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 583 aa Download sequence Send to blast |
MESHHLYGYG VTGANLSYSY SKATTPSLPN RLLGTLKFDS RNSPNSPFAN YFDPDTPTTL 60 SDSLEQHSST ENISGTSPSS NSSLDYNHYF HRPSPSPNFR PNTLLVRSGE TSLQQYANHS 120 QNMKHALLQL ETALMGPEEE ATTSSPSAGD IKQPQTSGQR SRMWNQEGQV SRRIETQPLH 180 VSAFGISSSG IQSEKRHKAM EDLSLQGIPS GNLKQLLIAC ARALAENKLD DFGSLIAKAR 240 NAVSITGDPI QRLGAYIVEG LVARKEASGT NIYRALRCKE PAGRDLLSYM QILYEICPYL 300 KFGYMAANGA IAEACRNEDR IHIIDFQIAQ GTQWLTLLQA LAARPSGAPH VRITGIDDPV 360 SKYARGDGLT LVGERLAEVS KKFNIPVEFH AVPVFAPEVT RDMLDVRPGE ALAVNFPLVL 420 HHTPDESVDV TNPRDELLRM VKSLSPKVVT LVEQESNTNT APFFPRFLEA LDYYCAMFES 480 IDVTLERDRK ERINVEQHCL ARDIVNIIAC EGKERVERHE LLGKWKLRFT MAGFRQYPLS 540 SYVNSVIKSL LRCYSEHYTL VEKDGAMLLG WKDRNLISAS AWH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 8e-64 | 210 | 583 | 1 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU878027 | 0.0 | EU878027.1 Capsicum annuum scarecrow-like protein (SCL1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009594671.1 | 0.0 | PREDICTED: scarecrow-like protein 21 | ||||
Swissprot | Q69VG1 | 0.0 | CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1 | ||||
TrEMBL | A0A1S3ZG68 | 0.0 | A0A1S3ZG68_TOBAC; scarecrow-like protein 21 | ||||
STRING | XP_009594671.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3441 | 24 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 1e-172 | GRAS family protein |
Publications ? help Back to Top | |||
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