PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009594633.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 433aa    MW: 49898.3 Da    PI: 5.9006
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009594633.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR139.61.7e-12117196191
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     +fY+e+A+  GF + k +s+k+  n+ +   ++ C ++ k+++++          +++r +C+a+++  ++++g  +v+k++++HnH+l p
  XP_009594633.1 117 DFYKEHARLSGFCIFKITSNKK-GNDIVRYVQYGCDRSRKPRNKH----------VTKRRNCRARINGILKENGSLRVSKVVKKHNHQLEP 196
                     6**************9999997.677799*******998887765..........55999********9*99****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.0E-9117196IPR004330FAR1 DNA binding domain
PfamPF105518.3E-26316408IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MNYNQETSLE PLNPNNSLET RSEQLRNALY ISLGLNSDDS LMSEDEWVNI DSDNNFNDGE  60
DHVENVDDDD DDNHYLEEEE EEEVGEDREM SNELNEEDLV IGPITGMRFS NKDVMFDFYK  120
EHARLSGFCI FKITSNKKGN DIVRYVQYGC DRSRKPRNKH VTKRRNCRAR INGILKENGS  180
LRVSKVVKKH NHQLEPALSR LMAGHRSLSK SLKRALIAKD IAGLRPSKNI RVIEVLAGGP  240
ENLGCTPKDC RNFILESRKL QLQEGDAQSL LKFFSDMQQK DREFYYSVDV DSFYRLRNIV  300
WVHSHSKVTY EEFHDVICLD TTYLVNQYNM PFDSFVGVNQ HRQSKLLGCA FMSSEDITSY  360
KMVLSMWLGA LNNVHPLDIM TDQCDSIMSV INALMPNTVH RYCMWHIFAK LPMKLSGVLD  420
GKIAKAEFKA YSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009594633.10.0PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A1J6IYE70.0A0A1J6IYE7_NICAT; Protein far-red impaired response 1
STRINGXP_009594633.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1301943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.15e-50FAR1 family protein