PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009594425.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 316aa    MW: 35598.9 Da    PI: 6.1722
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009594425.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.61.3e-14131178355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + h ++Er+RR+r+ ++f  L +l+P++     kKl+Ka++L  A++YIk+L+
  XP_009594425.1 131 QDHVMAERKRRERLTQRFIALSTLIPNL-----KKLDKASVLGDAIKYIKQLE 178
                     6799************************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.19128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-12131178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-18132193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.55E-15133182No hitNo description
SuperFamilySSF474592.49E-17133191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-16134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MDMSSATWWS EMERTNMNDH SFINNNHSQM MTPFNELPFN KPFSSCNYGY SSLPSANTTT  60
VATNHFENLN YTSVKTDQLT SGTTLNFSSS VSTTDCDDFG DSQNLIQALG FGAADITTQK  120
KSYNRTSLQA QDHVMAERKR RERLTQRFIA LSTLIPNLKK LDKASVLGDA IKYIKQLEEQ  180
VKTLEEKAKN CSDESAVAVK RARVLSSYDE YSSSSDENSS ISTDRSFPDI EVRVSDGNFM  240
ISIYCKKQTG IIKEIYNEVE KLHLSIISSS VMPFGYSTTH MTIIAQMDYK LSMTPNHVAN  300
RIRAVMMKEE DTTLTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-13132187864Transcription factor MYC2
5gnj_B1e-13132187864Transcription factor MYC2
5gnj_E1e-13132187864Transcription factor MYC2
5gnj_F1e-13132187864Transcription factor MYC2
5gnj_G1e-13132187864Transcription factor MYC2
5gnj_I1e-13132187864Transcription factor MYC2
5gnj_M1e-13132187864Transcription factor MYC2
5gnj_N1e-13132187864Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136141ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009594425.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A1S4D2J20.0A0A1S4D2J2_TOBAC; transcription factor bHLH18-like
STRINGXP_009594425.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45081443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-47bHLH family protein