PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009594403.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 285aa    MW: 31426.4 Da    PI: 4.5573
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009594403.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH130.0002161207455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +   +rrR  ri ++++ L el P +     kK   a+   +++++Ik+Lq
  XP_009594403.1 161 RAALSDRRRKMRIAERIDALGELFPCS-----KKGGRASLMDEVIDHIKNLQ 207
                     556779********************9.....7888899999********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.59E-7155211No hitNo description
Gene3DG3DSA:4.10.280.102.5E-7155214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-9156215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.909157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGEQSQPNAL ETQWAFLGGT NDSYYLAGHE LNKQCMAGVG IDGMHYVSVP SPQWIHDQQT  60
PQNYVEYLAE NVVSEVQVDA SAEASGFRLV DSSADIISQE QIRYPSPYFE GVPLDFLIGS  120
ESQVGALTWE PAGDARLASG PCSEALAAGS SYLSKSSRKA RAALSDRRRK MRIAERIDAL  180
GELFPCSKKG GRASLMDEVI DHIKNLQFQI KDLSWSRLGG EPSSIPFLFV EGCGHYILDE  240
QLIEPLEETL GKLLEVNPSM TTQLLENKGL FFMPMTLAEG MHHHE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754485e-91HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009594402.10.0PREDICTED: transcription factor bHLH69 isoform X1
RefseqXP_009594403.10.0PREDICTED: transcription factor bHLH69 isoform X1
TrEMBLA0A1S3ZPF30.0A0A1S3ZPF3_TOBAC; transcription factor bHLH69-like isoform X1
STRINGXP_009594402.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.12e-16LJRHL1-like 2