PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009593862.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HRT-like | ||||||||
Protein Properties | Length: 495aa MW: 55250.8 Da PI: 9.9088 | ||||||||
Description | HRT-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 52.5 | 8e-17 | 285 | 315 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l++GsvC r+P+ g+KRC+eHKGm++ XP_009593862.1 285 ICGVALGHGSVCIRPPIMGNKRCAEHKGMKV 315 8****************************97 PP | |||||||
2 | HRT-like | 61.4 | 1.4e-19 | 393 | 423 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGv+l+dGs+C+rqP+ gRKRCeeHKGmR+ XP_009593862.1 393 MCGVHLNDGSFCTRQPAVGRKRCEEHKGMRV 423 6*****************************7 PP | |||||||
3 | HRT-like | 47.6 | 2.9e-15 | 466 | 494 | 2 | 30 |
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmR 30 CG++l +Gs+C+r+P +g+KRC++HKGm+ XP_009593862.1 466 CGATLCNGSFCRRKPSEGNKRCWQHKGMK 494 ****************************8 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000033 | Biological Process | regulation of seed dormancy process | ||||
GO:0097100 | Molecular Function | supercoiled DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 495 aa Download sequence Send to blast |
MYNSLSEGAK ASSMGATHRS VTVRLNREDC KRTKHDSAFS DWKILIGPND WTNYLLGKEG 60 AEKYRTQNLP NCTSCSGVYE LGIAVSRHQA GREASRLDPD YIVPVYVGKS DIVRTRLQRY 120 GREGAHLENI CSNSALHDQE NVSASKRAGL FTEAFSRGFS IVYRWAPMND NKDAEKTESQ 180 LLDRFDYAWN KGSNGVRRHN DVLHKLDRIS RATRLPAFVR KLQLSLEKQK GVKIKACKPL 240 LLENGSEFHD SFKGTYFLPQ IFKFGRSNPR IISLSSGVNG DPNTICGVAL GHGSVCIRPP 300 IMGNKRCAEH KGMKVNGVNS KLIAECLEHK GRSRGLISQP VTDKSCHWTH NPILENRTYS 360 TDDGQQMLSR TADTQHPQDF SSCPLIGKNH KVMCGVHLND GSFCTRQPAV GRKRCEEHKG 420 MRVKEPISKQ LGVEIPSVFA GPATKISSEK MHWNIDIPSV NHSPACGATL CNGSFCRRKP 480 SEGNKRCWQH KGMKS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009593862.1 | 0.0 | PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2 isoform X8 | ||||
TrEMBL | A0A1S3YDY4 | 0.0 | A0A1S3YDY4_TOBAC; protein EFFECTOR OF TRANSCRIPTION 2-like isoform X1 | ||||
STRING | XP_009593858.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56780.1 | 4e-85 | effector of transcription2 |