PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009593861.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | HRT-like | ||||||||
Protein Properties | Length: 533aa MW: 59479.9 Da PI: 10.1026 | ||||||||
Description | HRT-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 52.4 | 8.8e-17 | 251 | 281 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l++GsvC r+P+ g+KRC+eHKGm++ XP_009593861.1 251 ICGVALGHGSVCIRPPIMGNKRCAEHKGMKV 281 8****************************97 PP | |||||||
2 | HRT-like | 61.2 | 1.5e-19 | 359 | 389 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGv+l+dGs+C+rqP+ gRKRCeeHKGmR+ XP_009593861.1 359 MCGVHLNDGSFCTRQPAVGRKRCEEHKGMRV 389 6*****************************7 PP | |||||||
3 | HRT-like | 50.6 | 3.1e-16 | 432 | 461 | 2 | 31 |
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CG++l +Gs+C+r+P +g+KRC++HKGmR+ XP_009593861.1 432 CGATLCNGSFCRRKPSEGNKRCWQHKGMRV 461 *****************************7 PP | |||||||
4 | HRT-like | 50.8 | 2.8e-16 | 504 | 532 | 2 | 30 |
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmR 30 CG++l++Gs+C+r+P kg+KRC++HKGm+ XP_009593861.1 504 CGATLRNGSFCRRKPSKGNKRCWQHKGMK 532 ****************************8 PP |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:2000033 | Biological Process | regulation of seed dormancy process | ||||
GO:0097100 | Molecular Function | supercoiled DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 533 aa Download sequence Send to blast |
MSFIHKGEKI LIGPNDWTNY LLGKEGAEKY RTQNLPNCTS CSGVYELGIA VSRHQAGREA 60 SRLDPDYIVP VYVGKSDIVR TRLQRYGREG AHLENICSNS ALHDQENVSA SKRAGLFTEA 120 FSRGFSIVYR WAPMNDNKDA EKTESQLLDR FDYAWNKGSN GVRRHNDVLH KLDRISRATR 180 LPAFVRKLQL SLEKQKGVKI KACKPLLLEN GSEFHDSFKG TYFLPQIFKF GRSNPRIISL 240 SSGVNGDPNT ICGVALGHGS VCIRPPIMGN KRCAEHKGMK VNGVNSKLIA ECLEHKGRSR 300 GLISQPVTDK SCHWTHNPIL ENRTYSTDDG QQMLSRTADT QHPQDFSSCP LIGKNHKVMC 360 GVHLNDGSFC TRQPAVGRKR CEEHKGMRVK EPISKQLGVE IPSVFAGPAT KISSEKMHWN 420 IDIPSVNHSP ACGATLCNGS FCRRKPSEGN KRCWQHKGMR VKEPISKQLE AEIPSVFAGP 480 ATKISSEKMH WNIDIPSVNH SPACGATLRN GSFCRRKPSK GNKRCWQHKG MKS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009593861.1 | 0.0 | PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2 isoform X6 | ||||
Refseq | XP_016450421.1 | 0.0 | PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2-like isoform X2 | ||||
TrEMBL | A0A1S3YDV4 | 0.0 | A0A1S3YDV4_TOBAC; protein EFFECTOR OF TRANSCRIPTION 2-like isoform X2 | ||||
STRING | XP_009593858.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G56780.1 | 1e-74 | effector of transcription2 |