PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009593583.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 269aa MW: 30593.5 Da PI: 8.18

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009593583.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.2	6.5e-53	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelvv+yL+kkv++ +l++ ++i+ev++yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++++ XP_009593583.1 15 LPPGFRFHPTDEELVVHYLEKKVASAPLSV-TIIAEVHLYKFDPWELPSKANFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIFTS 108 79**************************.89***********99999************************************98 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++g+kktL+fy+g+ kg k++Wvmheyrl XP_009593583.1 109 nGTKKIGVKKTLIFYRGKPLKGMKSNWVMHEYRL 142 67788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.03E-63	9	169	IPR003441	NAC domain
PROSITE profile	PS51005	61.511	15	168	IPR003441	NAC domain
Pfam	PF02365	2.4E-28	16	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MESTGLMSGS NHLQLPPGFR FHPTDEELVV HYLEKKVASA PLSVTIIAEV HLYKFDPWEL 60 PSKANFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPIFTSNG TKKIGVKKTL 120 IFYRGKPLKG MKSNWVMHEY RLVDNNSSLT KKCSLRLDDW VLCRIYKKNS SSTIMEMDKE 180 DSIEDTTGST SILPASSMNY FDQNPSIGAL RVGSNFDEFL ENDMKIAKNE YENGDDTPLM 240 EGNSSSFLTM LNQISPRSSQ LNSWFSGYR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-72	11	172	13	169	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-72	11	172	13	169	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-72	11	172	13	169	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-72	11	172	13	169	NO APICAL MERISTEM PROTEIN
3swm_A	1e-72	11	172	16	172	NAC domain-containing protein 19
3swm_B	1e-72	11	172	16	172	NAC domain-containing protein 19
3swm_C	1e-72	11	172	16	172	NAC domain-containing protein 19
3swm_D	1e-72	11	172	16	172	NAC domain-containing protein 19
3swp_A	1e-72	11	172	16	172	NAC domain-containing protein 19
3swp_B	1e-72	11	172	16	172	NAC domain-containing protein 19
3swp_C	1e-72	11	172	16	172	NAC domain-containing protein 19
3swp_D	1e-72	11	172	16	172	NAC domain-containing protein 19
4dul_A	1e-72	11	172	13	169	NAC domain-containing protein 19
4dul_B	1e-72	11	172	13	169	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269\|PubMed:17124321, ECO:0000269\|PubMed:22278768}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009593583.1	0.0	PREDICTED: NAC transcription factor 56
Swissprot	A0SPJ6	1e-93	NAMB2_TRITD; NAC transcription factor NAM-B2
TrEMBL	A0A1S3ZDG8	0.0	A0A1S3ZDG8_TOBAC; NAC transcription factor 56-like
STRING	XP_009593583.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1814	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	7e-93	NAC domain containing protein 25

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]