PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009593547.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 334aa    MW: 36966.1 Da    PI: 9.0443
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009593547.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP921.3e-2855137383
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssas 83 
                     g+kdrhsk++T +g+RdRR+Rls+++a+ ++ Lqd+LG+ ++sk i+WLl + k++i++l+ ++ +++s +   ++++  + +
  XP_009593547.1  55 GGKDRHSKVCTVRGLRDRRIRLSVPTAIHLYNLQDRLGLSQPSKVIDWLLDATKHEIDKLPPLQMPPPSLShfFNNTNTYMRD 137
                     79*************************************************************88888333332222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.0E-2756164IPR005333Transcription factor, TCP
PROSITE profilePS5136928.44956114IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MMNPSGNKSQ ANKQEADHDH DTNKSKISRT PSSSSRQSWA GFKNPRIVRV SRSFGGKDRH  60
SKVCTVRGLR DRRIRLSVPT AIHLYNLQDR LGLSQPSKVI DWLLDATKHE IDKLPPLQMP  120
PPSLSHFFNN TNTYMRDGSN QELLSINESG AKIGDHLMRE AAFGKDKWIA SNEQENQDGT  180
NIGSYVPLLS SQNISSLPAG MLNSNMPFNN NYHNLSLALF GNNNHTFSSQ TEDNLPISVA  240
SSNYMSFPSG SHQLYFCPTA TTLSSLVPAP FMSTTNSQLN HFHFLNSSTT NSQHVLPNPL  300
APTLQLISPP VKTSKTNDHP NGINSQDNGD LDNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-1861115155Putative transcription factor PCF6
5zkt_B7e-1861115155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009593547.10.0PREDICTED: transcription factor TCP17-like
RefseqXP_016468689.10.0PREDICTED: transcription factor TCP17-like
TrEMBLA0A1S3ZWH20.0A0A1S3ZWH2_TOBAC; transcription factor TCP17-like
STRINGXP_009593547.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.19e-42TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5