PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009593520.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 429aa    MW: 46859.6 Da    PI: 9.4153
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009593520.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55e-05196218223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +C++Cg+ F  ++ L+ H  + H
  XP_009593520.1 196 TCHKCGEQFGKWEALEAHHLSkH 218
                     7*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280197218IPR007087Zinc finger, C2H2
SuperFamilySSF563991.73E-21220428No hitNo description
Gene3DG3DSA:3.90.228.108.9E-8233408IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MGEKKNMPAV WFSLKRSLHC KSEPSDVHDP KTRKQLSTIL TRKGGGSRSG CSRSIANLKD  60
VIHGSKRHLE KPPSCSPRSI GSSEFLNPIT HEVILSNSRC ELKITSFNGF QESGGGTNGS  120
TFVGTLRPGT PGPGGNPTMH YFNSGCRNSV ATPTRRSASF LVDKESSANF GGGHSFPCKT  180
TRHSLDNDVN GTSGVTCHKC GEQFGKWEAL EAHHLSKHAV SELLEGDSSR KIVEIICRSS  240
WLKSESHVGR IERVLKVHNT QKTLARFEEY REMVKVKASK LPKKHPRCIA DGNELLRFYG  300
TTLACGLGMN GTCSLCVSDK CCVCRIIRNG FTTKKELKGG IGVFTTSTSA RAYECIELSD  360
DDPSLRKALI VCRVVAGRVH RPLENIQEMA GQTGFDSLAG KVGVYSNIEE LYLLNPRALL  420
PCFVVICKA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5609000.0EU560900.1 Capsicum annuum clone DEG190-B transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009593520.10.0PREDICTED: uncharacterized protein LOC104090171
TrEMBLA0A1S4DMT50.0A0A1S4DMT5_TOBAC; uncharacterized protein LOC107831486
STRINGXP_009593520.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22442235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-172C2H2 family protein