PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009593275.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ZF-HD | ||||||||
Protein Properties | Length: 223aa MW: 25659.1 Da PI: 9.9159 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 98.2 | 6.4e-31 | 57 | 114 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 +v+YkeClkNhAas+Gg++vDGCgEf+p++++ +++++lkC CgCHRnFHRr+ ++ XP_009593275.1 57 AVTYKECLKNHAASIGGYTVDGCGEFIPTPDAIaADPTSLKCDVCGCHRNFHRRKRDD 114 799***************************99999*******************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-15 | 58 | 106 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.5E-26 | 58 | 112 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.2E-27 | 59 | 111 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.343 | 60 | 111 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-28 | 136 | 204 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.23E-19 | 138 | 204 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.8E-24 | 143 | 199 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MDSTYSIPTR NHIPTKTPDS EKDFPPYPQV PLKPLSFTNV TSKKHHQVHN HQPPSAAVTY 60 KECLKNHAAS IGGYTVDGCG EFIPTPDAIA ADPTSLKCDV CGCHRNFHRR KRDDDFMDFR 120 HHHAQVATPA TPTALKPEKP RRRRRFRTKF SQEQKNRMYS FSEKLGWKLQ KCDEAMVEEF 180 CNEIGVGKGV FRVWMHNNKS TLGKKGFPKC QQQYQTVPYN NKQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-19 | 144 | 201 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009593275.1 | 1e-170 | PREDICTED: zinc-finger homeodomain protein 10-like isoform X1 | ||||
Swissprot | Q9LXG0 | 2e-52 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | A0A1S4A3N0 | 1e-168 | A0A1S4A3N0_TOBAC; zinc-finger homeodomain protein 10-like | ||||
STRING | XP_009593275.1 | 1e-169 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1088 | 24 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 2e-39 | zinc finger homeodomain 1 |
Publications ? help Back to Top | |||
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