PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009593145.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 358aa MW: 40501.3 Da PI: 6.8599 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62.4 | 9.4e-20 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lvd+++++G ++W++ ++ g++R++k+c++rw +yl XP_009593145.1 15 KGPWTPEEDQKLVDYIHKYGHENWRALPKLAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.9 | 4.9e-18 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E++l+v+++ +lG++ W++Ia +++ gRt++++k++w+++l XP_009593145.1 68 RGKFSEDEEKLIVKLHSLLGNK-WSAIATRLP-GRTDNEIKNYWNTHL 113 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.165 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.22E-31 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-16 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-18 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-25 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.22E-13 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 27.501 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 6.1E-17 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.1E-17 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.14E-12 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-26 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MRRSAEFDDM SGLKKGPWTP EEDQKLVDYI HKYGHENWRA LPKLAGLNRC GKSCRLRWTN 60 YLRPDIKRGK FSEDEEKLIV KLHSLLGNKW SAIATRLPGR TDNEIKNYWN THLRKKLLQM 120 GIDPVTHRPR TDHINLFNAL IGNLPPQLLA AFTSSFINTN TSSINPQFDM NNTLTNSLFS 180 DTTQLIHQIQ LLQNSSLLVN SLIRNATATT SPLNIEALNQ ILGSHNQLQE YNSTFQQFLS 240 NSSDSLIDFG LKSSNVNAEF THANNFSGKL DYQEINDTKL GGDQLILSGT CSTSSSVIGN 300 DQMKNISKMP NENTSDIYPK QELIMQPSSA STSTFEAWDQ IMGNEEASDS YWRDISNH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-31 | 13 | 117 | 5 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009593145.1 | 0.0 | PREDICTED: transcription factor MYB39-like | ||||
TrEMBL | A0A1S3ZX40 | 0.0 | A0A1S3ZX40_TOBAC; transcription factor MYB39-like | ||||
STRING | XP_009593145.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 3e-80 | myb domain protein 9 |