PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009592986.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 204aa MW: 23724.5 Da PI: 7.5662 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.5 | 8.6e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W +eEde lv +++lG ++W++ a+ g++R++k+c++rw++yl XP_009592986.1 14 RGQWLEEEDESLVMIIAMLGERRWDALAKASGLRRSGKSCRLRWLNYL 61 899*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.5 | 2.3e-16 | 70 | 112 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T++E+ l++++ kq+G++ W++Ia+ ++ gRt++++k++w+++l XP_009592986.1 70 ITADEEHLIIQLQKQFGNK-WSKIAEQLP-GRTDNEIKNYWRSHL 112 59*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.47 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.6E-26 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-20 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.46E-8 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.037 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-24 | 69 | 115 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-14 | 70 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.20E-10 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 204 aa Download sequence Send to blast |
MASKLTMHQD ELRRGQWLEE EDESLVMIIA MLGERRWDAL AKASGLRRSG KSCRLRWLNY 60 LRPNLKHGHI TADEEHLIIQ LQKQFGNKWS KIAEQLPGRT DNEIKNYWRS HLRKKALKYE 120 QESFGSNTSN SEQQSSTLKS DTVPSSHSDD YFSGKGDCSS AYSLAYSSND TTLLDWIPSW 180 SYEQSRMEHH MYFCSSNLCF CYPP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-25 | 11 | 116 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 5e-25 | 11 | 116 | 55 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 5e-25 | 11 | 116 | 55 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009592988.1 | 1e-152 | PREDICTED: myb-related protein MYBAS1-like | ||||
Refseq | XP_018624159.1 | 1e-152 | PREDICTED: myb-related protein MYBAS1-like | ||||
Refseq | XP_018624160.1 | 1e-152 | PREDICTED: myb-related protein MYBAS1-like | ||||
Swissprot | Q9SCP1 | 2e-49 | MYB27_ARATH; Transcription factor MYB27 | ||||
TrEMBL | A0A1S4D661 | 1e-141 | A0A1S4D661_TOBAC; myb-related protein MYBAS1-like isoform X1 | ||||
STRING | XP_009592986.1 | 1e-152 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G53200.1 | 3e-51 | myb domain protein 27 |
Publications ? help Back to Top | |||
---|---|---|---|
|