PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009592952.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LSD | ||||||||
Protein Properties | Length: 62aa MW: 6982.45 Da PI: 8.2237 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 45.3 | 1.4e-14 | 20 | 43 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Crt+L+YP GApsV+Ca+C+ XP_009592952.1 20 CGNCRTMLMYPCGAPSVKCAICHY 43 **********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57889 | 4.19E-5 | 17 | 54 | No hit | No description |
TIGRFAMs | TIGR01053 | 4.7E-15 | 17 | 47 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.8E-14 | 20 | 44 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 62 aa Download sequence Send to blast |
MVISVELIAS GPNQFAHVNC GNCRTMLMYP CGAPSVKCAI CHYITHVNVR MLVPFLILWW 60 MT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 2e-46 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009783614.1 | 5e-22 | PREDICTED: protein LSD1-like isoform X2 | ||||
Refseq | XP_009783615.1 | 5e-22 | PREDICTED: protein LSD1-like isoform X2 | ||||
Swissprot | Q6ASS2 | 2e-13 | LOL3_ORYSJ; Protein LOL3 | ||||
TrEMBL | A0A0V0HPW9 | 7e-21 | A0A0V0HPW9_SOLCH; Uncharacterized protein | ||||
TrEMBL | A0A2G3A6T2 | 4e-21 | A0A2G3A6T2_CAPAN; Protein LSD1 | ||||
STRING | XP_009592952.1 | 4e-39 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1679 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.8 | 1e-12 | LSD family protein |
Publications ? help Back to Top | |||
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