PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009592948.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TALE
Protein Properties Length: 524aa    MW: 59237.9 Da    PI: 5.9402
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009592948.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.33.1e-093143511954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +e+  LA+++gLt +qV +WF N R +
  XP_009592948.1 314 FEHflHPYPKDSEKIMLARHTGLTRSQVANWFINARVR 351
                     554459******************************88 PP
2BELL119.71.3e-38180251172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     +r++l++k +k  s+l+eVd+rYk y++q+q+v+ssFe+vaglg+akpYtslAlk+iSr+FrcL+dai++qi
  XP_009592948.1 180 DRHDLESKMTKFFSMLDEVDRRYKEYYQQMQAVVSSFEMVAGLGAAKPYTSLALKTISRQFRCLRDAIKKQI 251
                     6899*******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.5E-55104249IPR006563POX domain
PfamPF075261.5E-46110247IPR006563POX domain
PROSITE profilePS5007112.098292355IPR001356Homeobox domain
CDDcd000862.87E-11295356No hitNo description
SMARTSM003892.8E-9295359IPR001356Homeobox domain
SuperFamilySSF466895.56E-17296361IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.1E-28298361IPR009057Homeodomain-like
PfamPF059204.4E-17312351IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MRCCSFHQPV NRELFVPNVE QSLQNQGLSL SLGTQVPPSL HVYSYQDDYT NSSLSSLVGT  60
HVLHSEQGSE NKESKVAEYL SFDLSRGTRA ANNPQNSMSL RDMNSGARSI YNSKYLKAAQ  120
DLLDEVVNVQ EALKQSDRLR NFNLLGQDRS EEADLKSSCS ASGISGDHNN STKGELSPAD  180
RHDLESKMTK FFSMLDEVDR RYKEYYQQMQ AVVSSFEMVA GLGAAKPYTS LALKTISRQF  240
RCLRDAIKKQ IQATRRSLGE QGDSQGERLY RLRYVDQQLR QQRSLQQFGM MRQPWRPQRG  300
LPETAVSVLR AWLFEHFLHP YPKDSEKIML ARHTGLTRSQ VANWFINARV RLWKPMIEDM  360
YKEEFGEAEA GSGASPDRAP EESKEKSIAE NTGEEIPESF TTPAVNCSHL DPSDESSNVT  420
NVQNNSFTTK FIFQDGTYEH EKIDAVNTYH ASMLGDIMGN QVSLALRLQN SQIDQQPISG  480
RAQLAEDDKT GSTLDISKGE YYYIDPVNQQ ERFSGPHLLS DFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-16301358158Homeobox protein Meis1
4xrs_B1e-16301358158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-165HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755161e-165HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009592948.10.0PREDICTED: BEL1-like homeodomain protein 7 isoform X2
TrEMBLA0A1S4D1I50.0A0A1S4D1I5_TOBAC; BEL1-like homeodomain protein 7 isoform X2
STRINGXP_009592946.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-100BEL1-like homeodomain 6