PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009592946.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TALE
Protein Properties Length: 621aa    MW: 69883.6 Da    PI: 5.5204
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009592946.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox283.8e-094114481954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +e+  LA+++gLt +qV +WF N R +
  XP_009592946.1 411 FEHflHPYPKDSEKIMLARHTGLTRSQVANWFINARVR 448
                     554459******************************88 PP
2BELL119.41.7e-38277348172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     +r++l++k +k  s+l+eVd+rYk y++q+q+v+ssFe+vaglg+akpYtslAlk+iSr+FrcL+dai++qi
  XP_009592946.1 277 DRHDLESKMTKFFSMLDEVDRRYKEYYQQMQAVVSSFEMVAGLGAAKPYTSLALKTISRQFRCLRDAIKKQI 348
                     6899*******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.5E-55201346IPR006563POX domain
PfamPF075262.0E-46207344IPR006563POX domain
PROSITE profilePS5007112.098389452IPR001356Homeobox domain
SMARTSM003892.8E-9392456IPR001356Homeobox domain
CDDcd000861.81E-11392453No hitNo description
SuperFamilySSF466896.84E-17393458IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-27395458IPR009057Homeodomain-like
PfamPF059205.4E-17409448IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MSAYYSNLSN QREVLPMSFL PDQKFDSYHS AGLSDSSIHL NQHSSTVSYS ELPAQNYGEV  60
QTIRGKDEML FIPPTSESGG MQLIGRSVNS APNFLENSVM MDPRSFPTKQ LFVPNVEQSL  120
QNQGLSLSLG TQVPPSLHVY SYQDDYTNSS LSSLVGTHVL HSEQGSENKE SKVAEYLSFD  180
LSRGTRAANN PQNSMSLRDM NSGARSIYNS KYLKAAQDLL DEVVNVQEAL KQSDRLRNFN  240
LLGQDRSEEA DLKSSCSASG ISGDHNNSTK GELSPADRHD LESKMTKFFS MLDEVDRRYK  300
EYYQQMQAVV SSFEMVAGLG AAKPYTSLAL KTISRQFRCL RDAIKKQIQA TRRSLGEQGD  360
SQGERLYRLR YVDQQLRQQR SLQQFGMMRQ PWRPQRGLPE TAVSVLRAWL FEHFLHPYPK  420
DSEKIMLARH TGLTRSQVAN WFINARVRLW KPMIEDMYKE EFGEAEAGSG ASPDRAPEES  480
KEKSIAENTG EEIPESFTTP AVNCSHLDPS DESSNVTNVQ NNSFTTKFIF QDGTYEHEKI  540
DAVNTYHASM LGDIMGNQVS LALRLQNSQI DQQPISGRAQ LAEDDKTGST LDISKGEYYY  600
IDPVNQQERF SGPHLLSDFV A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16398455562Homeobox protein Meis2
3k2a_B2e-16398455562Homeobox protein Meis2
4xrs_A2e-16398455158Homeobox protein Meis1
4xrs_B2e-16398455158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009592946.10.0PREDICTED: BEL1-like homeodomain protein 7 isoform X1
TrEMBLA0A1S4D2020.0A0A1S4D202_TOBAC; BEL1-like homeodomain protein 7 isoform X1
STRINGXP_009592946.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112582022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.25e-99BEL1-like homeodomain 6