PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009592504.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 519aa    MW: 58146.1 Da    PI: 10.2482
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009592504.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.24e-0882124147
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaai 47 
                     +++ GV+ +k  g++ A I+dp     + k+++lg+f ta+eA  a+ 
  XP_009592504.1  82 TKFAGVHKRK-CGKYGAAIKDPI----KkKKVWLGSFKTAQEASNAYL 124
                     6899***999.7*********72....35*****************95 PP
2AP234.84.1e-11230274452
             AP2   4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                     +G+r+ k +g++ A Irdp    +r k+++lg+f+t eeA +a+  ++ +
  XP_009592504.1 230 HGIRRQK-NGKYGAVIRDP----IRlKQIWLGTFDTVEEASEAYFSYKSE 274
                     69*9888.8*********8....369******************988766 PP
3AP239.11.9e-12321367252
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                     ++ GV+ +k +g++ +eI  p     + k+++lg+fgtaeeA +a+   +++
  XP_009592504.1 321 HIVGVHKNK-WGKYTSEITNPI----TkKKIWLGTFGTAEEASRAYQSKKLE 367
                     789***999.*******99972....36*****************9776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.54E-1282123No hitNo description
Gene3DG3DSA:3.30.730.103.6E-1283123IPR001471AP2/ERF domain
SMARTSM003802.3E-583141IPR001471AP2/ERF domain
PROSITE profilePS5103212.7683142IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-1083130IPR016177DNA-binding domain
SMARTSM003801.8E-4228276IPR001471AP2/ERF domain
PROSITE profilePS5103212.879228288IPR001471AP2/ERF domain
PfamPF008472.3E-4230276IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-11230268IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-9230272IPR016177DNA-binding domain
CDDcd000183.25E-12231268No hitNo description
PfamPF008472.7E-7320364IPR001471AP2/ERF domain
CDDcd000185.87E-14320361No hitNo description
PROSITE profilePS5103214.341321383IPR001471AP2/ERF domain
SMARTSM003807.8E-8321375IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-12322369IPR016177DNA-binding domain
PRINTSPR003674.3E-5322333IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-14324370IPR001471AP2/ERF domain
PRINTSPR003674.3E-5344360IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
METVAEQKET EEKTSNKKQN KLTQVVILDS DAVVSSASES QESRRRWSAE ILDYKVKEQN  60
HNHNHNHNHM DSNSTVMDLH ATKFAGVHKR KCGKYGAAIK DPIKKKKVWL GSFKTAQEAS  120
NAYLVKQSEF AAQLELLKAN QDSTKTKSKS SASVQLRQKI PSSQLKSQGS NSTNTTNAAE  180
RSKTNGKNLF IREIRKDSFQ EKQGTRRSSS DGCNINTVTT SSTKAKLSLH GIRRQKNGKY  240
GAVIRDPIRL KQIWLGTFDT VEEASEAYFS YKSEFDKLCQ LGNKENKPKS CDQIQHESPV  300
GASLSLDTAS VGRDKRRKTT HIVGVHKNKW GKYTSEITNP ITKKKIWLGT FGTAEEASRA  360
YQSKKLEFQK LVKAKQKQCT NNQTHFTGES SDQRIDSREK RQSISMTRNL LGTSLNTAEE  420
AFRAYHQSKE FDFQCSTKAG LQNNMPTDSS GGEKKQEGQV DEDLWMGHWI QLPGGSEVKF  480
SLKLGLPIID NYGSLLGKDE HVVFANGAPH NRGVHVATN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
188106KRKCGKYGAAIKDPIKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754435e-43HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018624049.10.0PREDICTED: uncharacterized protein LOC104089342
TrEMBLA0A1S3ZEC40.0A0A1S3ZEC4_TOBAC; uncharacterized protein LOC107785831
STRINGXP_009592504.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43411240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.22e-14ERF family protein