PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009592281.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 508aa MW: 56330 Da PI: 5.3665 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.2 | 1.4e-16 | 27 | 74 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l ++vk++G g+W+++ r g+ R++k+c++rw ++l XP_009592281.1 27 KGPWTATEDAILMEYVKKHGEGNWNAVQRNSGLMRCGKSCRLRWANHL 74 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 50.7 | 4.2e-16 | 80 | 123 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+ ++++++++lG++ W++ a+ ++ gRt++++k++w++ XP_009592281.1 80 KGAFSPEEERIIIELHAKLGNK-WARMAAQLP-GRTDNEIKNYWNT 123 799*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.314 | 22 | 74 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-30 | 25 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-13 | 26 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-14 | 27 | 74 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-23 | 28 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.97E-11 | 29 | 74 | No hit | No description |
PROSITE profile | PS51294 | 26.491 | 75 | 129 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-16 | 79 | 127 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-15 | 80 | 123 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.75E-12 | 82 | 125 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.2E-26 | 82 | 128 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0090406 | Cellular Component | pollen tube | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 508 aa Download sequence Send to blast |
MALDDRGMKV SSGGGRNGGT SRQALKKGPW TATEDAILME YVKKHGEGNW NAVQRNSGLM 60 RCGKSCRLRW ANHLRPNLKK GAFSPEEERI IIELHAKLGN KWARMAAQLP GRTDNEIKNY 120 WNTRLKRRQR AGLPIYPQEL QPQNQQENNQ HQNLLSSPYD PKRATYNNNN PPSFSLLDIF 180 NPSTMKPSIT QQFPLNNNNI FRDPPKGISL TLPSSIRNSQ FSSLSKSVPN NNFGHGLSNS 240 MPMPSFQNNY PSFNNFTTRP FAGNIHSNPN ELISGIGGIN NINYPSGQSS IPVTASSSEN 300 TGSDFGSSDA NNYANVAGLS RGNSGLLEDL LEESQTLTTR TVKIEDQNNN LDLKEEEADY 360 KGKSLWEDYG LVEEEGEEAI LTEESVYSFA HGVDVTLNSN SESSSPDPKL SSGILKKEVS 420 LQGINQVDDD IMCLLDNFPL AVPVPDWYDE REDKNNSNGQ LSNVTNGDHK AENQAEDSNK 480 SQVVTNSGPR NHDWELGGCC WNNMPSFC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-30 | 25 | 128 | 5 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00287 | DAP | Transfer from AT2G32460 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009592281.1 | 0.0 | PREDICTED: transcription factor RAX3 | ||||
TrEMBL | A0A1S3Y3X8 | 0.0 | A0A1S3Y3X8_TOBAC; transcription factor RAX3 | ||||
STRING | XP_009592281.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.2 | 2e-70 | myb domain protein 101 |