PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009592240.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SRS
Protein Properties Length: 376aa    MW: 41492.3 Da    PI: 7.4086
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009592240.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702241.1e-075286539
          DUF702  5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathv 39
                    + +C  CGn a+  C ++ C+ CC      C+ hv
  XP_009592240.1 52 KPKCIKCGNVARSRCPFQSCKSCCAKAQNPCHIHV 86
                    568*******************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MAGTASSPAL SNHSADSAPS PASAPAATTV TAAVVSSHPT INASKNLRGL NKPKCIKCGN  60
VARSRCPFQS CKSCCAKAQN PCHIHVLKGG STLPDKLPSS GSPVVDQQST EASHSGSSHR  120
GAASLRQLST NFAQFNNLQT PLRSRKPLTR KDAQLINEWR FMKLKEYRDS NIAAENEAFD  180
RYMQNVGLLE EVFAVNSAED ERNEDGSTED DNEATINRLK LQLRSDPTRI ENTRKRMQYI  240
VDQGLRKLRK LESGDNATDL SDLDALGKKK KAKSAEAEWV VSFTDLIDKL NKARNEEDLK  300
ACWEMKSQLF NQNKKEKQAE SDNAEASIEQ SSKASVLPTM PSGYSPPKWF STSTIDDEEL  360
RRLNAQFDSL EDIEEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT7795260.0KT779526.1 UNVERIFIED: Capsicum annuum hypothetical protein-like mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009592240.10.0PREDICTED: uncharacterized protein LOC104089117 isoform X1
TrEMBLA0A1S3XEN50.0A0A1S3XEN5_TOBAC; uncharacterized protein LOC107764281 isoform X1
STRINGXP_009592240.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85441114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32730.14e-87