PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009592172.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 254aa    MW: 28749.2 Da    PI: 4.7738
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009592172.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-20103153155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++y+GVr+++ +grW+AeIrdp+    r kr++lg+++t+eeAa  +++a+  l+g
  XP_009592172.1 103 KKYRGVRQRP-WGRWAAEIRDPT----RgKRVWLGTYDTPEEAATVYDRAAVMLKG 153
                     59********.**********84....35*********************988876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381232.8E-784254IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000188.85E-34103161No hitNo description
SMARTSM003805.5E-38104167IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-23104162IPR016177DNA-binding domain
PfamPF008476.8E-14104153IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-31104162IPR001471AP2/ERF domain
PROSITE profilePS5103224.316104161IPR001471AP2/ERF domain
PRINTSPR003672.5E-10105116IPR001471AP2/ERF domain
PRINTSPR003672.5E-10127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MILQPPPVKF SEHLVTTNKQ VHELNKRSMK NPQKVVRIIL TDGDATDSSD DEEDQFMVRR  60
VKRYVTQINY TLLPESPKQE SQPQQSSRKR CLPSSDSDVS SRKKYRGVRQ RPWGRWAAEI  120
RDPTRGKRVW LGTYDTPEEA ATVYDRAAVM LKGPDAVTNF PLVSPAIETT EVESIIVSPA  180
RTEVSSKDVA LSPTSVLRSD DFGPFDGSLG FSEVDAFGFE IDYPFGLTGF GMSEKYFAEE  240
FSEFDFDDFA LEVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-22103162464ATERF1
3gcc_A9e-22103162464ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009592172.10.0PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
SwissprotO046822e-85PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A1S4BQR50.0A0A1S4BQR5_TOBAC; pathogenesis-related genes transcriptional activator PTI6-like
STRINGXP_009592172.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52272137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-38cytokinin response factor 4