PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009592004.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CAMTA
Protein Properties Length: 965aa    MW: 107869 Da    PI: 6.3306
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009592004.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1171.71.1e-53131273116
            CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                     +e + rwl++ e++ iL+n+e  +l+++++++p sgs++L+n++++ryfrkDG+sw+kkkdg+tv E+he+LKvg+ e+l+cyYah+e+np+fqr
  XP_009592004.1  13 REgHFRWLRPAEVVFILQNHEDQQLANQPPQKPASGSMFLFNKRVLRYFRKDGHSWRKKKDGRTVGEAHERLKVGNAEALNCYYAHGEKNPNFQR 107
                     55588****************************************************************************************** PP

            CG-1  97 rcywlLeeelekivlvhyle 116
                     r+yw+L+ ++e+ivlvhy++
  XP_009592004.1 108 RSYWMLDPAYEHIVLVHYRD 127
                     ******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.9328134IPR005559CG-1 DNA-binding domain
SMARTSM010766.9E-7411129IPR005559CG-1 DNA-binding domain
PfamPF038591.3E-4716127IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.0E-9403490IPR013783Immunoglobulin-like fold
PfamPF018334.9E-8406481IPR002909IPT domain
CDDcd001026.51E-6406490No hitNo description
SuperFamilySSF812963.64E-18406490IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.204.0E-13605699IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029712.408605697IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484036.06E-14609699IPR020683Ankyrin repeat-containing domain
CDDcd002044.36E-12610697No hitNo description
PfamPF127966.6E-7625698IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.843638670IPR002110Ankyrin repeat
SMARTSM0001564755777IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.876756785IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525403.45E-6805862IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.63814836IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.51815844IPR000048IQ motif, EF-hand binding site
PfamPF006120.0011817835IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0013837859IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.883839863IPR000048IQ motif, EF-hand binding site
PfamPF006122.3E-5840859IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 965 aa     Download sequence    Send to blast
MAESGYNIND LVREGHFRWL RPAEVVFILQ NHEDQQLANQ PPQKPASGSM FLFNKRVLRY  60
FRKDGHSWRK KKDGRTVGEA HERLKVGNAE ALNCYYAHGE KNPNFQRRSY WMLDPAYEHI  120
VLVHYRDITE GMQIAAFMSQ SSPISSTFSL SPSLYSTQHP GFTVFGSESY QQYPNESSPG  180
SGEVCSDAGI NGKGMNISDI TGRTEGVSSS PRVEISQALR KLEEQLSLND DSLEQIDPLY  240
SEIENSDDVE NFVHDNNSLV QIQHKSNNLL LQPHSGESSE SQHQLLNLDG NIWKEMLDHC  300
RSFPAAESPA KCFEKLDENG TLQTSSGVGP IEATESDRWL KFGGKALKSS LTNFKQVEDF  360
KYPACARINT YGSYSDQYTT IFDQDQIGTS FEDDMSLTIA QKQKFTIHDI SPDWGYSSEA  420
TKIVIVGSFL CNPSEYTWTC MFDDIEVPVQ IINEGAIRCQ APPHLPCKVT LCVTTGNRVS  480
CSEVWEFEYR VKFDDHGQKN LAEVGGACKS SEELLLLVRF VQMLLSDSSV QKGDGSGSSN  540
DILENSKASE DSWSQVIESL LFGTSTSMVT VDWLLQELLK DRLKQWLSSK LQVKNNQMGY  600
SFSRKEQGII HMVAGLGFEW ALHPILDAGV GVNFRDINGW TALHWAARFG REKMVASLVA  660
SSAFAGAVTD PSSQDPFGRT AASIASSCGH KGVAGYLSEV ALTSHLSSLT LEENELSKGT  720
ADVEAERTIS SISTTSAATH EDQLSLKDTL AAVRNAAQAA ARIQSAFRAH SFRKRRQREA  780
ARAATTSGDE YCVLSNDVLG LSAASKLAFR NMRDYNSAAL AIQKKYRGWK CRKDFLAFRQ  840
KVVKIQAHVR GYQVRKEYKV CWAVGILEKV VLRWRRRGVG LRGFRLEEEP IEESEDEDIL  900
KLFRKQKVDA AINEAVSRVL SMVDSPEARQ QYHRILEKYR QAKAELGVKS DTVSTAHGDM  960
ENSDI
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN5660470.0JN566047.1 Solanum lycopersicum calmodulin-binding transcription factor SR2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009592004.10.0PREDICTED: calmodulin-binding transcription activator 4-like isoform X1
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A1S4D3340.0A0A1S4D334_TOBAC; calmodulin-binding transcription activator 4-like isoform X1
STRINGXP_009592002.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]