PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009591865.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TCP | ||||||||
Protein Properties | Length: 420aa MW: 46042.4 Da PI: 6.1932 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 126.6 | 2.5e-39 | 59 | 208 | 2 | 136 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.ssssaseceaesssssasnsssg....... 88 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG d++sk++eWLl++a p+i el+ + ++++a++ ++e++ss++ +++ + XP_009591865.1 59 SGGKDRHSKVWTSKGLRDRRVRLSVNTAIQFYDLQDRLGCDQPSKAVEWLLKAAAPSIAELPPLeGFPDAQQLSDEKRSSAGVEPGFDaadveld 153 689*************************************************************7666664444444444433333336667777 PP TCP 89 ......kaaksaakskksqksaasalnlak.esrakarararertrekmriknkl 136 ++++++++s++s++s+ s l+l++ esr kar ra+er ek++ k+k+ XP_009591865.1 154 dddpnfNQQQQQPCSSNSETSKGSGLSLSRsESRIKARGRANERAVEKKKEKEKE 208 778887888888899999999999***********************99998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.2E-39 | 60 | 204 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.175 | 61 | 119 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 8.677 | 184 | 205 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MEIEEIQAQE CKFPRISNKI GYQDEELDDV GEVKKSSFGD IGKLYGWPSS RIVRVSRASG 60 GKDRHSKVWT SKGLRDRRVR LSVNTAIQFY DLQDRLGCDQ PSKAVEWLLK AAAPSIAELP 120 PLEGFPDAQQ LSDEKRSSAG VEPGFDAADV ELDDDDPNFN QQQQQPCSSN SETSKGSGLS 180 LSRSESRIKA RGRANERAVE KKKEKEKESD HHQNMHPSSS FTELLAGGMS NNNNNNNNRN 240 TSPIHQNTQR QWSTNPLEYF TSGLLDPSST RGIDNSTGFS GQVYLGNPLQ PLIAVSSPMF 300 SISGDHQPEL QHFPFGGNNL VPVVTANGES NTQSNTSNEY NLNFSISRGT LQSNSSSTSP 360 SILPHHFQRF SPIDGSQSLF LGTTMATAAA PNAAALYDAP LQLFYGNGYN HSDQKGKGKN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-21 | 66 | 120 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-21 | 66 | 120 | 1 | 55 | Putative transcription factor PCF6 |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009591865.1 | 0.0 | PREDICTED: transcription factor TCP2-like | ||||
TrEMBL | A0A1S4ANR4 | 0.0 | A0A1S4ANR4_TOBAC; transcription factor TCP2-like | ||||
STRING | XP_009591865.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2464 | 22 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 2e-45 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |