PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009591124.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 508aa    MW: 55959.8 Da    PI: 6.4202
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009591124.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.92.9e-30234293159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  XP_009591124.1 234 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 293
                     58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-32219295IPR003657WRKY domain
SuperFamilySSF1182909.94E-28227295IPR003657WRKY domain
PROSITE profilePS5081129.161229295IPR003657WRKY domain
SMARTSM007743.2E-37234294IPR003657WRKY domain
PfamPF031064.0E-27235293IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MENNKSEGDE MEIDLSLKLD SREEEIEPLN EENQSSEVNA KTQGKDQELS KAETSGSSKT  60
EELSMLQMEM NKMKEENKFL RKAVEQTMKD YYDLQAKFTT IHQNNHEKDH RNFLSLSGND  120
DITEGLTRSP KILDIKNRTL SQTSQELDDI MDGDQLGLSL TLVSSNSSTT ASRLVESTEE  180
ERKEKIKEDN AAITTQIQNK GNFQGGLTSH VTTASPPNRK ARVSVRARCE SATMNDGCQW  240
RKYGQKIAKG NPCPRAYYRC TVAPGCPVRK QVQRCLEDMS ILITTYEGTH NHPLPVGATA  300
MASTTSAAAS FMLVDSSINP LLNGNINQAV NFPNYHNHAP NYSHHIPNSS SSPSPYFSNL  360
RNNILNSSDP NIVLDLTKNI SNDHHHQFPF VSSSSNSSAT ATTNQLGQYS WMAKLPSNNY  420
DGNSSTIVNN LFTGPKLLGD HHHQNSSSNP ILAENMSVIA SDPKFRVAVA AAISSLINKD  480
QNHPISTAMP SSLGDRGDSN GGSVRHSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-22221297176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754403e-53HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755133e-53HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009591124.10.0PREDICTED: probable WRKY transcription factor 9
SwissprotQ9C9F02e-74WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBLA0A1S3WZE70.0A0A1S3WZE7_TOBAC; probable WRKY transcription factor 9
STRINGXP_009591124.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72872129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.12e-66WRKY DNA-binding protein 9