PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009591034.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 268aa MW: 28277.9 Da PI: 4.7522 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.1 | 3.4e-16 | 101 | 150 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ++G+r +++g+Wv+eIr+p++ ++r++lg++ t+e+Aa+a++ a+++l+g XP_009591034.1 101 PVFRGIR--SRSGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVAALALKG 150 5799**6..678*********843...5***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.7E-9 | 101 | 150 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-25 | 102 | 158 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.902 | 102 | 158 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.88E-17 | 102 | 159 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.0E-27 | 102 | 166 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.31E-15 | 103 | 158 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MADHPADDST KTSQKNQPPQ PSESSQTPFI PIPPTLLPPP PVEETNISPR PLISNIAILE 60 ITKSPPKTVQ LPNIIPTVTT TMSSTSSGGG SPSRPTCGKH PVFRGIRSRS GKWVSEIREP 120 RKTTRIWLGT YPTPEMAAAA YDVAALALKG GDAVINFPGN LTSYPSLPPS PSPADIRKAA 180 ASAAALMKPQ TGEGTMLTQP GNVDDQTSGS GQMISTGGAE YIDEEALFDM PNLLVDMAEA 240 MMVSPPRMNS PPSSDSPGNS DAESLWSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-13 | 93 | 158 | 5 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00558 | DAP | Transfer from AT5G52020 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009591034.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF027-like isoform X1 | ||||
Swissprot | Q9FJ90 | 1e-50 | ERF25_ARATH; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | A0A1S4D5B3 | 1e-141 | A0A1S4D5B3_TOBAC; ethylene-responsive transcription factor ERF027-like | ||||
STRING | XP_009591034.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA553 | 22 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 4e-41 | ERF family protein |
Publications ? help Back to Top | |||
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