PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009590822.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 544aa MW: 60746.9 Da PI: 6.5065 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 453.9 | 1e-138 | 174 | 544 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l+++L++cA+a s+gdl aq+l+++l++++s +g+p+qRl ay++e+L arla s+s++yk+ +++e + s e l+++++++ev+P++kf++ XP_009590822.1 174 LKHVLIACAKAESDGDLLTAQWLISELRQMVSVSGEPIQRLGAYILEGLVARLAASGSSIYKSQRCKEPA---SFELLSYMHILHEVCPYFKFGY 265 689******************************************************************9...9********************* PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 + aN aI ea++ e+rvHiiDf+isqG QW++L+qa+a+Rp+gpp++RiTg+++++s + l+ +g+rL+ +Ae+++vpfef++ +a +++d XP_009590822.1 266 MSANGAIAEAMKDEQRVHIIDFQISQGSQWVTLIQAFAARPGGPPHIRITGIDDSKSAyaRGGGLNIVGKRLSTLAESFKVPFEFHA-AAISTSD 359 ******************************************************888899999************************.8999*** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++le+L ++pgEalaVn+++ lh+++desvs+e++rd++++lvksl+Pkvv++veqe+++n++ F+ rfle+l+yy+a+f+s++a+lpr+++eri XP_009590822.1 360 VQLENLGIRPGEALAVNFAFVLHHMPDESVSTENHRDRLIRLVKSLNPKVVTLVEQESNTNTAAFFPRFLETLDYYTAMFESIDATLPRAHKERI 454 *********************************************************************************************** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +vE+++l+++ivn++aceg er+erhe l+kW++r+++aGF+p+pls+ +++++k+l++++ + yr+ee++g+l+lgW++r Lv+ +aW+ XP_009590822.1 455 NVEQHCLAKDIVNIIACEGIERVERHELLGKWKSRFRMAGFSPYPLSSLVNSTIKALVENYCD-KYRLEERDGALYLGWMNRDLVASCAWK 544 *************************************************************95.5*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 69.349 | 148 | 525 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.6E-136 | 174 | 544 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 544 aa Download sequence Send to blast |
MQASQRLRRS AMSDTLYKSV QKTEASYLPQ FQTLDKQMTN INRTQGGNHS IQTYSDWYCT 60 LESSSPTGKY AVQNSISAVS FTPNGSPISH QESQSCLSDV HYLPDTNYNS PVSGSCITDD 120 VNDFRHKLKE LETVMLGPNS DVLDSCDNSL PSCMTSPEIG CWRQMLEAIP RGDLKHVLIA 180 CAKAESDGDL LTAQWLISEL RQMVSVSGEP IQRLGAYILE GLVARLAASG SSIYKSQRCK 240 EPASFELLSY MHILHEVCPY FKFGYMSANG AIAEAMKDEQ RVHIIDFQIS QGSQWVTLIQ 300 AFAARPGGPP HIRITGIDDS KSAYARGGGL NIVGKRLSTL AESFKVPFEF HAAAISTSDV 360 QLENLGIRPG EALAVNFAFV LHHMPDESVS TENHRDRLIR LVKSLNPKVV TLVEQESNTN 420 TAAFFPRFLE TLDYYTAMFE SIDATLPRAH KERINVEQHC LAKDIVNIIA CEGIERVERH 480 ELLGKWKSRF RMAGFSPYPL SSLVNSTIKA LVENYCDKYR LEERDGALYL GWMNRDLVAS 540 CAWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-60 | 181 | 543 | 26 | 378 | Protein SCARECROW |
5b3h_A | 2e-60 | 181 | 543 | 25 | 377 | Protein SCARECROW |
5b3h_D | 2e-60 | 181 | 543 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009590821.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_009590822.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_018623528.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Swissprot | Q9LDL7 | 0.0 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | A0A1S4B947 | 0.0 | A0A1S4B947_TOBAC; scarecrow-like transcription factor PAT1 isoform X1 | ||||
STRING | XP_009590821.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
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