PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009590475.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 541aa    MW: 60041 Da    PI: 5.3531
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009590475.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS327.82.2e-1001815402374
            GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     v+ L+++ e+++++ ++la+ +Larl+++ +s +g+p+qR+a+yf+eAL+a+la+      ++ +++++s+++++++++++k+fs++sPi+ fs 
  XP_009590475.1 181 VDELIRFTECFETNAFQLAHVILARLNQRlRSAAGKPLQRAAFYFKEALQAQLAG------STRQTRPASSSDVIQTIKSYKIFSNISPIPMFSS 269
                     6789************************999************************......778888999999********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     +taNqa+leav+g+  vH+iDfdi+ G++W++++++La+++    +++p lRiT+++++e   + e + ++e+L++fA+el++ fe+++++ +++
  XP_009590475.1 270 FTANQAVLEAVDGSMLVHVIDFDIGLGGHWASFMKELADKAecrkANAPVLRITALVPEE--YAVESRLIRENLTQFARELNIGFEIDFVLIRTF 362
                     **************************************877666689***********66..99999**************************** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsl.eaklpre 278
                     e l+++++++  gE++aV l+ +++r         s    +++ ++++sP++vv+v++e  + ++++sF + +++ le+ys+l++sl +a+++  
  XP_009590475.1 363 ELLSFKAIKFMDGEKTAVLLSPAIFRRI------GS---GFVNDLRRISPNMVVHVDSEglMGYGTASFRQTVIDGLEFYSTLLESLeAANIGGG 448
                     **************************98......44...8*******************87788***********************88999999 PP

            GRAS 279 s..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                     +  ++++k+E+++l ++iv++va+ g++        ++W++++ +aGF+pv ls++a  qa++ll +v+++g++v +++++++l+W+dr+Lv++S
  XP_009590475.1 449 NcgDWMRKIENFVLFPKIVDMVAAVGRR------GGGSWKDAMVAAGFRPVGLSQFADFQADCLLGRVQVRGFHVAKRQAEMLLCWHDRALVATS 537
                     999************************8......99*********************************************************** PP

            GRAS 372 aWr 374
                     aWr
  XP_009590475.1 538 AWR 540
                     **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.7154520IPR005202Transcription factor GRAS
PfamPF035147.5E-98181540IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MKVPFSSNDN VSSKPLISNN NNNLQNATFP AATNGPNLCY EPKSVLELRR SPSPIVEKQV  60
ITNPDFSALC GGDDPLQLGD HVLSNFEDWD SLMRELGLQD DSASLSKSNP QLSLTQSESL  120
TQFHNLSEFS ADSTQFPTSD FSFSENFPQQ FQSVNQGNYI NALDLSGDIH QNNWNVGFDY  180
VDELIRFTEC FETNAFQLAH VILARLNQRL RSAAGKPLQR AAFYFKEALQ AQLAGSTRQT  240
RPASSSDVIQ TIKSYKIFSN ISPIPMFSSF TANQAVLEAV DGSMLVHVID FDIGLGGHWA  300
SFMKELADKA ECRKANAPVL RITALVPEEY AVESRLIREN LTQFARELNI GFEIDFVLIR  360
TFELLSFKAI KFMDGEKTAV LLSPAIFRRI GSGFVNDLRR ISPNMVVHVD SEGLMGYGTA  420
SFRQTVIDGL EFYSTLLESL EAANIGGGNC GDWMRKIENF VLFPKIVDMV AAVGRRGGGS  480
WKDAMVAAGF RPVGLSQFAD FQADCLLGRV QVRGFHVAKR QAEMLLCWHD RALVATSAWR  540
C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-2618953927377Protein SCARECROW
5b3h_D5e-2618953927377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5177910.0EF517791.1 Solanum melongena BAC 77N19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009590475.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232101e-147SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A1S3WZT50.0A0A1S3WZT5_TOBAC; scarecrow-like protein 15
STRINGXP_009590475.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA83052230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-149GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]