PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009590398.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 250aa MW: 28733.1 Da PI: 9.1644 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.5 | 3.6e-09 | 25 | 69 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 WT+eE +++ a + + + +W ++a ++ g+t +++ + XP_009590398.1 25 EWTQEENKKFESALAIYDERtpnRWFKVADLIP-GKTVYDVMKQYK 69 7********************************.*******98876 PP | |||||||
2 | Myb_DNA-binding | 40.9 | 4.8e-13 | 120 | 164 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + ++G+g+W+ I+r + +t+ q+ s+ qky XP_009590398.1 120 PWTEEEHRRFLMGLDKHGKGDWRNISRNFVISKTPTQVASHAQKY 164 8*****************************789***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-4 | 17 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 7.925 | 21 | 76 | IPR017884 | SANT domain |
SMART | SM00717 | 2.4E-9 | 22 | 74 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.72E-11 | 24 | 76 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.0E-7 | 25 | 69 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.85E-7 | 25 | 71 | No hit | No description |
PROSITE profile | PS51294 | 19.38 | 113 | 169 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.73E-16 | 114 | 168 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.8E-17 | 116 | 168 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 8.4E-11 | 117 | 167 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-11 | 117 | 164 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.07E-8 | 120 | 164 | No hit | No description |
Pfam | PF00249 | 3.3E-11 | 120 | 164 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
METLWATSLI PNSSWMMMEQ RKSSEWTQEE NKKFESALAI YDERTPNRWF KVADLIPGKT 60 VYDVMKQYKE LAADVSDIEA GLFPVPPSSF MLELVDDNRG VQAFRKRGRS FDQERKKGVP 120 WTEEEHRRFL MGLDKHGKGD WRNISRNFVI SKTPTQVASH AQKYYLRQLS GGKDKRRPSI 180 HDITTVNLTN IDLSDNNLNS NNNNNNNKFP SSFAVNNPLQ NSNDGALMAF GSSYNSSSYP 240 YEFGSVNIWN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 104 | 116 | RKRGRSFDQERKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00489 | DAP | Transfer from AT5G05790 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009590398.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Refseq | XP_016455127.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 6e-80 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A1S3YSW9 | 0.0 | A0A1S3YSW9_TOBAC; transcription factor DIVARICATA-like | ||||
STRING | XP_009590398.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA458 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05790.1 | 1e-80 | MYB family protein |
Publications ? help Back to Top | |||
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