PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009589935.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 357aa    MW: 39986.4 Da    PI: 9.8243
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009589935.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.64.6e-32290348259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYegeHnh+
  XP_009589935.1 290 ADEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHNHP 348
                     69************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.8E-18242287IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.7E-34277349IPR003657WRKY domain
PROSITE profilePS5081130.71284350IPR003657WRKY domain
SuperFamilySSF1182901.57E-27287349IPR003657WRKY domain
SMARTSM007743.5E-40289349IPR003657WRKY domain
PfamPF031068.7E-28291348IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MFSGVERGEM EEIEEANKVA IESCHRVISL LSKPQDQNQY GNLLVRETGE AVYKFKKVVT  60
LLNSTLGHAR VRKMNKFKTP LPHNILVENP SCKIDDQHKA LRLLPIDSPE NRILEMGANV  120
KCNLTLGSSS LELSSNSRNP LNFGQQTPLP SYNFLQQQQQ QQQRRFLLQQ QQLKQPAEMM  180
YRHSNSGISL NFDSSTCTPT MSSTRSFISS LSVDGSVANL DGSSFHLIGA SRSVDHSSFQ  240
HKRRCSAAGD EGSMKCGSSG RCHCSKKRKH RVKRSIKVPA ISNKLADIPA DEYSWRKYGQ  300
KPIKGSPHPR GYYKCSSMRG CPARKHVERC LEDPSMLIVT YEGEHNHPTL PSQSANA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-21282351775WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009589935.10.0PREDICTED: probable WRKY transcription factor 21
SwissprotO043361e-118WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A1J6IQ160.0A0A1J6IQ16_NICAT; Putative wrky transcription factor 21
STRINGXP_009589935.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32712350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.12e-96WRKY DNA-binding protein 21