PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009589660.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ZF-HD
Protein Properties Length: 175aa    MW: 19631.5 Da    PI: 8.1333
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009589660.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer90.61.4e-28967457
     ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegt.....aaalkCaACgCHRnFHRrev 57
                      Y+eCl+NhAaslG++a+DGCgEf+ +++++++     +a+l+CaACgCHRnFHR+  
  XP_009589660.1  9 NIYRECLRNHAASLGSYATDGCGEFTLDDDDDNNntspgSASLHCAACGCHRNFHRKVI 67
                    57*************************98877545788899***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.7E-241066IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-161165IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.8E-231165IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.0951166IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.1E-1691161IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-2892162IPR009057Homeodomain-like
TIGRFAMsTIGR015659.9E-27102160IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MQGDKANDNI YRECLRNHAA SLGSYATDGC GEFTLDDDDD NNNTSPGSAS LHCAACGCHR  60
NFHRKVIYGA SYSNNSSRDR EIMAADDYAG GRTAEESPRS GKKRFRTKFT TDQKEKMLAF  120
AEKLGWTLQR KDQENETERF CREVGVSRKV FKVWMHNHKN NTSSISTGNA SSLTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-211031641878ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754429e-73HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBankHG9755159e-73HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009589660.11e-130PREDICTED: zinc-finger homeodomain protein 2-like
SwissprotQ9M9S03e-40ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A1S3XD311e-111A0A1S3XD31_TOBAC; zinc-finger homeodomain protein 5-like
TrEMBLA0A1U7W9L71e-111A0A1U7W9L7_NICSY; zinc-finger homeodomain protein 5-like
STRINGXP_009589660.11e-130(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118652023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.24e-41homeobox protein 31