PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009589597.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MIKC_MADS

Protein Properties

Length: 231aa MW: 26487 Da PI: 8.7157

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009589597.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	96	1.6e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ienk+nrqvtf+kRrng+lKKA+ELSvLC+aeva+iifs++gklye+ss XP_009589597.1 9 KKIENKINRQVTFAKRRNGLLKKAYELSVLCEAEVALIIFSTRGKLYEFSS 59 68***********************************************96 PP
2	K-box	74.1	3.9e-25	84	167	9	92
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 ++++e+ ++e+ kLk+++e+Lqr qRhllG++L++L++ eL++Le qL++slk+i+s++++l++e + l +k +e+ en+ XP_009589597.1 84 GRDSNEEKFYREYLKLKAKYESLQRYQRHLLGDELGPLNIDELEHLELQLDTSLKHIKSTREKLWIEANKGLERKLEEIYAENN 167 5688999**********************************************************************9999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	5.2E-39	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	32.898	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	5.54E-42	2	78	No hit	No description
SuperFamily	SSF55455	3.14E-32	2	85	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-31	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.9E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-31	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-31	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	5.2E-19	86	167	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	12.297	89	187	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MGRGRVELKK IENKINRQVT FAKRRNGLLK KAYELSVLCE AEVALIIFST RGKLYEFSST 60 SNTLKTLERY QKCSYGTLEV KQSGRDSNEE KFYREYLKLK AKYESLQRYQ RHLLGDELGP 120 LNIDELEHLE LQLDTSLKHI KSTREKLWIE ANKGLERKLE EIYAENNLQQ SWGGGEQSGA 180 YSQQHPQTQG FFQPLECNST LQIGYDPASS SQITAVTSGQ NINGIVPGWM L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	2e-18	1	61	1	61	MEF2C
5f28_B	2e-18	1	61	1	61	MEF2C
5f28_C	2e-18	1	61	1	61	MEF2C
5f28_D	2e-18	1	61	1	61	MEF2C
6byy_A	2e-18	1	61	1	61	MEF2 CHIMERA
6byy_B	2e-18	1	61	1	61	MEF2 CHIMERA
6byy_C	2e-18	1	61	1	61	MEF2 CHIMERA
6byy_D	2e-18	1	61	1	61	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ471790	0.0	DQ471790.1 Nicotiana langsdorffii x Nicotiana sanderae SEPALLATA mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009589597.1	1e-170	PREDICTED: developmental protein SEPALLATA 1-like isoform X3
Refseq	XP_016476137.1	1e-170	PREDICTED: developmental protein SEPALLATA 1-like isoform X2
Swissprot	Q8LLR2	1e-114	MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBL	A0A1S4AHH1	1e-169	A0A1S4AHH1_TOBAC; developmental protein SEPALLATA 1-like isoform X2
STRING	XP_009589584.1	1e-166	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02310.1	2e-91	MIKC_MADS family protein

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]