PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009589427.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 149aa MW: 17054.5 Da PI: 6.484

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009589427.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	120.3	1.1e-37	5	102	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk lrr+C++dC++ pyfp ++p+kf +vh ++Gasnv k+l++++e++r d++++l+yeA +r++dPvyG+vg+i+ l++++ ql+ el XP_009589427.1 5 RCAACKQLRRRCPSDCIFLPYFPPNNPQKFSCVHSIYGASNVGKMLQQVQEHQRGDVADTLYYEAYCRIKDPVYGCVGIITVLHEEIYQLQCELT 99 6********************************************************************************************99 PP DUF260 96 llk 98 ++ XP_009589427.1 100 KVL 102 875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.83	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.9E-38	5	101	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MTSTRCAACK QLRRRCPSDC IFLPYFPPNN PQKFSCVHSI YGASNVGKML QQVQEHQRGD 60 VADTLYYEAY CRIKDPVYGC VGIITVLHEE IYQLQCELTK VLAEIELLKA QSPLQGQQQV 120 EYFANLLADQ NGVYTSSPSL FDPSFHWFY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-36	6	109	12	113	LOB family transfactor Ramosa2.1
5ly0_B	1e-36	6	109	12	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	2e-48	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009589427.1	1e-109	PREDICTED: LOB domain-containing protein 24-like
Swissprot	P59468	1e-45	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A1J6KI98	2e-96	A0A1J6KI98_NICAT; Lob domain-containing protein 24
STRING	XP_009589427.1	1e-109	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5277	20	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	6e-48	LOB domain-containing protein 24