PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009589113.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 336aa MW: 35890.4 Da PI: 8.877 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.4 | 1.2e-08 | 171 | 196 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k e Cr + tGtC++G++C+F Hg+ XP_009589113.1 171 KSEVCRWWGDTGTCRFGSKCRFVHGK 196 5678888999**************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 4.4E-13 | 167 | 201 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-8 | 169 | 201 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.1E-5 | 169 | 196 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.727 | 169 | 197 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.8E-6 | 171 | 196 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MDFFYGNSND SQASKVQSLD VSPINSQNFI GRGRFYPGPK TRILNPYASS DSSGSSSNRV 60 LSPLARYLHS SSPVSFASDS PERRSLVNTS SGSRSGSGGG GVFRSPLASI ENIEIPTAFR 120 TPVKVEEDVV VMDGILVEPK HGARAKSLPS TSDSGGRLSS STSGSENSSH KSEVCRWWGD 180 TGTCRFGSKC RFVHGKEDLR PTAFANRNHS EALSSRSYSS GSRAYGPRGR SVHHQVHSAA 240 SSTESAAMAT PTTVKKVVST KDKEPPSSDS SPSSTTSTIV ISGTDWSPLD DNIEVSLPSS 300 GEKCPSREDV NAHIQTVLYG LSGRKRLPVF VEFSEE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009589110.1 | 0.0 | PREDICTED: tristetraprolin-like | ||||
Refseq | XP_009589111.1 | 0.0 | PREDICTED: tristetraprolin-like | ||||
Refseq | XP_009589112.1 | 0.0 | PREDICTED: tristetraprolin-like | ||||
Refseq | XP_016486985.1 | 0.0 | PREDICTED: tristetraprolin-like | ||||
Refseq | XP_016486986.1 | 0.0 | PREDICTED: tristetraprolin-like | ||||
Refseq | XP_016486987.1 | 0.0 | PREDICTED: tristetraprolin-like | ||||
Refseq | XP_016486988.1 | 0.0 | PREDICTED: tristetraprolin-like | ||||
Refseq | XP_018622991.1 | 0.0 | PREDICTED: tristetraprolin-like | ||||
TrEMBL | A0A1S4BDQ3 | 0.0 | A0A1S4BDQ3_TOBAC; tristetraprolin-like | ||||
STRING | XP_009589110.1 | 0.0 | (Nicotiana tomentosiformis) |