PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009589113.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 336aa    MW: 35890.4 Da    PI: 8.877
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009589113.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.41.2e-08171196227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     k e Cr +  tGtC++G++C+F Hg+
  XP_009589113.1 171 KSEVCRWWGDTGTCRFGSKCRFVHGK 196
                     5678888999**************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.4E-13167201IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-8169201IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-5169196IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.727169197IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-6171196IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MDFFYGNSND SQASKVQSLD VSPINSQNFI GRGRFYPGPK TRILNPYASS DSSGSSSNRV  60
LSPLARYLHS SSPVSFASDS PERRSLVNTS SGSRSGSGGG GVFRSPLASI ENIEIPTAFR  120
TPVKVEEDVV VMDGILVEPK HGARAKSLPS TSDSGGRLSS STSGSENSSH KSEVCRWWGD  180
TGTCRFGSKC RFVHGKEDLR PTAFANRNHS EALSSRSYSS GSRAYGPRGR SVHHQVHSAA  240
SSTESAAMAT PTTVKKVVST KDKEPPSSDS SPSSTTSTIV ISGTDWSPLD DNIEVSLPSS  300
GEKCPSREDV NAHIQTVLYG LSGRKRLPVF VEFSEE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009589110.10.0PREDICTED: tristetraprolin-like
RefseqXP_009589111.10.0PREDICTED: tristetraprolin-like
RefseqXP_009589112.10.0PREDICTED: tristetraprolin-like
RefseqXP_016486985.10.0PREDICTED: tristetraprolin-like
RefseqXP_016486986.10.0PREDICTED: tristetraprolin-like
RefseqXP_016486987.10.0PREDICTED: tristetraprolin-like
RefseqXP_016486988.10.0PREDICTED: tristetraprolin-like
RefseqXP_018622991.10.0PREDICTED: tristetraprolin-like
TrEMBLA0A1S4BDQ30.0A0A1S4BDQ3_TOBAC; tristetraprolin-like
STRINGXP_009589110.10.0(Nicotiana tomentosiformis)