PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009588506.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 172aa    MW: 19354.6 Da    PI: 10.4938
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009588506.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.35.8e-1320734397
                    S-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
              B3 43 grsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97
                      sW+vk+  + +++  ++t+GW  Fv++n+Lk+g ++ F+++++ s+ +l+v+ f
  XP_009588506.1 20 KGSWSVKC--KFGQQYAFFTSGWTTFVEENHLKVGNVCAFEYIKNpSSVRLKVSHF 73
                    479*****..88888899**************************999999988766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.828174IPR003340B3 DNA binding domain
CDDcd100172.97E-9273No hitNo description
Gene3DG3DSA:2.40.330.101.5E-121071IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-121973IPR015300DNA-binding pseudobarrel domain
PfamPF023629.7E-112173IPR003340B3 DNA binding domain
PfamPF030307.1E-11115169IPR004131Pyrophosphate-energised proton pump
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015992Biological Processproton transport
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0004427Molecular Functioninorganic diphosphatase activity
GO:0009678Molecular Functionhydrogen-translocating pyrophosphatase activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MAFARKYWQN DSFLKLWRGK GSWSVKCKFG QQYAFFTSGW TTFVEENHLK VGNVCAFEYI  60
KNPSSVRLKV SHFGGEDISS HRPLTKVSMA PFYVGSPLTM DGSYLRLHVL GKGSWRVNGV  120
ALVSLALFGA FVSRAETSTV YILTPKVFTG LIVGVMLPYW ISAMTMKRVL SF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6afw_A2e-18110171539599Pyrophosphate-energized vacuolar membrane proton pump
6afw_B2e-18110171539599Pyrophosphate-energized vacuolar membrane proton pump
6afx_A2e-18110171539599Pyrophosphate-energized vacuolar membrane proton pump
6afx_B2e-18110171539599Pyrophosphate-energized vacuolar membrane proton pump
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755182e-43HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009588507.11e-125PREDICTED: uncharacterized protein LOC104086059 isoform X2
RefseqXP_016511461.11e-125PREDICTED: uncharacterized protein LOC107828625
TrEMBLA0A1S4DDH61e-123A0A1S4DDH6_TOBAC; uncharacterized protein LOC107828625
STRINGXP_009588506.11e-124(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2008422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.13e-08related to vernalization1 1