PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009588487.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 404aa    MW: 44216.3 Da    PI: 8.1679
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009588487.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP129.63e-40582112137
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 
                      g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl++a p+i el+++++ + ++  +++++ss++ +++ +       
  XP_009588487.1  58 SGGKDRHSKVWTSKGLRDRRVRLSVNTAIQFYDLQDRLGYDQPSKAVEWLLKAAAPSISELPSLNAFPDTQQiSEDKRSSAGTEQGLDsaevemd 152
                     689*************************************************************5555533333333333333222224556666 PP

             TCP  89 .........kaaksaakskksqksaasalnlak.esrakarararertrekmriknkln 137
                               + +++a+s+ s++s+ s l+l++ e r kar+rarer +ek + k+k+n
  XP_009588487.1 153 gdpnyqhqhVSLSKSACSSTSETSKGSGLSLSRsENRVKARERARERAAEKEKEKEKEN 211
                     6777778765666666999999999999*****9*******************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-4059206IPR005333Transcription factor, TCP
PROSITE profilePS5136932.18160118IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.972186205IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MEVDEIQKQG CKFPRISNEN GRFESQDENG AVKGSHGLGG GRLCGWPSNR IVRVSRASGG  60
KDRHSKVWTS KGLRDRRVRL SVNTAIQFYD LQDRLGYDQP SKAVEWLLKA AAPSISELPS  120
LNAFPDTQQI SEDKRSSAGT EQGLDSAEVE MDGDPNYQHQ HVSLSKSACS STSETSKGSG  180
LSLSRSENRV KARERARERA AEKEKEKEKE NESTRTAHHQ NVPRISQNSS FTELLTGGLL  240
GLRGNDNSTS GFQAQIHLGN PIQQQPQPLP MSSPMFSITG DHHPELQHFP FVSDHLGTNG  300
HASNSANEYN LNFSISSSSS SGLAGYNRGT LQSNSSSLFP HFQRYEGSQS FFNGSTIAAA  360
TAPNNTAAAS VDNHHHFLSA YDAGRLQLFY NDSRHSDQKG KGKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2365119155Putative transcription factor PCF6
5zkt_B1e-2365119155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009588487.10.0PREDICTED: transcription factor TCP24-like isoform X2
TrEMBLA0A1S4DFF70.0A0A1S4DFF7_TOBAC; transcription factor TCP2-like
STRINGXP_009588486.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.23e-38TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2