PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009588295.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 494aa    MW: 51895.1 Da    PI: 8.2613
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009588295.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.63.6e-125377327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                    ++ C +++rtG+C yG+rC+F+H++
  XP_009588295.1 53 EPDCIYYLRTGFCGYGARCRFNHPR 77
                    799********************96 PP
2zf-CCCH375.6e-1299123327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C++++rtG Ck+G++Ck++H++
  XP_009588295.1  99 QPVCQYYMRTGMCKFGASCKYHHPR 123
                     689********************96 PP
3zf-CCCH32.71.3e-10144168226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C+++ +tG+Ck+G +CkF+H+
  XP_009588295.1 144 GEKECSYYVKTGQCKFGVTCKFHHP 168
                     7899********************8 PP
4zf-CCCH375.5e-12314340127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C++++++G CkyG++C+++H+p
  XP_009588295.1 314 PGQPECQYYMKYGDCKYGSSCRYHHPP 340
                     5789*********************97 PP
5zf-CCCH35.61.6e-11362386327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      ++C+++a++G Ck+G++CkF H++
  XP_009588295.1 362 APICSHYAQNGVCKFGPSCKFDHPM 386
                     589********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.0E-65077IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6525078IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-95377IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-65479IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-55677IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-796123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.55496124IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-899123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-699123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-5101123IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-5142169IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.136142170IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-5144170IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-8144168IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-6313340IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.389313341IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-9315340IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5317340IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-4319340IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-6358385IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-7359386IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878359387IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-9362386IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-5364384IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MERYSGTQSM EVGAPVDPVS EWTVPGGETG LEEPMWQLSL NTGPESYPER PNEPDCIYYL  60
RTGFCGYGAR CRFNHPRDRN SVLGAMRATG GEYPERVGQP VCQYYMRTGM CKFGASCKYH  120
HPRQGGGSPA PVTVNIYGYP LRPGEKECSY YVKTGQCKFG VTCKFHHPHP AGAQVPAPPA  180
GPGPLAVPAA VPAPHIYPTV QSPSVQSAQQ YGVVSGNWPV ARPTLLPGSY IPGTYGSMLL  240
PPGMVPLPGW TPYPAPASPA PSPSTQPPAA AGPIYGLSQL SPSAPAYMGP YLSVASASGP  300
SSSSQKEHAF PERPGQPECQ YYMKYGDCKY GSSCRYHHPP EWSGPKTSFI LSAMGLPLRP  360
GAPICSHYAQ NGVCKFGPSC KFDHPMGMSY SPSASSLTDM AVAPYPVRSS IGTLAPSSSS  420
SDLRPELVSG SARDAFSTQI SSMSTSSGSV GSMFSKGGHA SHSGVQQSVQ SANPSSGSSS  480
SSSAGHGGEA RTSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2437121e-113AC243712.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-44j2 map 1, complete sequence.
GenBankHG9755131e-113HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009588295.10.0PREDICTED: zinc finger CCCH domain-containing protein 58
RefseqXP_016434969.10.0PREDICTED: zinc finger CCCH domain-containing protein 58-like
SwissprotQ6NPN31e-164C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A1S3X4X90.0A0A1S3X4X9_TOBAC; zinc finger CCCH domain-containing protein 58-like
STRINGXP_009588295.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-132C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]