PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009588287.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 350aa    MW: 39454.9 Da    PI: 4.73
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009588287.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91e-1756104355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + GVr+++ +gr++AeIrdp++   + r++lg+f+ta+eAa a+++a+++++g
  XP_009588287.1  56 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 104
                     56******.**********965...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.61355112IPR001471AP2/ERF domain
SMARTSM003802.9E-3155118IPR001471AP2/ERF domain
CDDcd000183.37E-2855111No hitNo description
SuperFamilySSF541715.17E-2056112IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.4E-2856111IPR001471AP2/ERF domain
PRINTSPR003671.3E-75667IPR001471AP2/ERF domain
PfamPF008473.8E-1158104IPR001471AP2/ERF domain
PRINTSPR003671.3E-77894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010102Biological Processlateral root morphogenesis
GO:0010432Biological Processbract development
GO:0010451Biological Processfloral meristem growth
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MSSSSTPSSE NINQLPFSMF EPIRTPTGYS WLQRNTAICQ PSEKRGRRKQ AEPGRFLGVR  60
RRPWGRYAAE IRDPTTKERH WLGTFDTAQE AALAYDRAAL SMKGTQARTN FIYTCDNTNS  120
FPSLISPFDN VQNFLQPNSH FNFKNATTQN NNKNVITTTT SDNETSNNSH ESYSSYGSSP  180
NENNSFFSTP SHENSGYLDC IVPDSCLKPP SSSTPQSKMI IKNSQENSSN IDHHQNYMTT  240
FSENPSNFSF NSGFWDGDDQ EKYTSSWENS CELSAMMMNN NIMSSNTEIN GNNINEMVDV  300
GNCYYPNMEI NAAFDHDNMM VQPSEITTTS TTTSSIFQPF GDVEFGYSLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-2046111571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00520DAPTransfer from AT5G18560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009588287.10.0PREDICTED: ethylene-responsive transcription factor ERF086
RefseqXP_016434973.10.0PREDICTED: ethylene-responsive transcription factor ERF086-like
TrEMBLA0A1S3X5I70.0A0A1S3X5I7_TOBAC; ethylene-responsive transcription factor ERF086-like
STRINGXP_009588287.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93072125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.16e-49ERF family protein