PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009588286.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 235aa MW: 26338.9 Da PI: 9.0665 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00015 | 107 | 129 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C k Fs++ L H++ H XP_009588286.1 107 YECHFCLKKFSNSRALGGHQNAH 129 99******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.86E-6 | 104 | 134 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.9E-4 | 104 | 133 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.177 | 107 | 134 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 109 | 129 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MDEAVYQKST NYNLLSTGRN GTDIICCKTS ASDKKLRIFG FELNPCLKDS ICSRSERHES 60 VSSFETFMDE RPKEKTSICM NSSGIVLPNP NENLRNLSVS AVMELKYECH FCLKKFSNSR 120 ALGGHQNAHR RERLKKKRMD LEAKRASSSM FYLNALIRNN GVMYPYSYVP TIVYGSSLIS 180 FSSVYHCQNG THSPCFTVAS SSGELYLQNS SFIAIQGGES RGRYPLSLVI VPSTS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009794591.1 | 1e-126 | PREDICTED: zinc finger protein 5-like | ||||
Refseq | XP_016433875.1 | 1e-126 | PREDICTED: zinc finger protein 5-like | ||||
TrEMBL | A0A1S3X1L2 | 1e-125 | A0A1S3X1L2_TOBAC; zinc finger protein 5-like | ||||
TrEMBL | A0A1U7XY92 | 1e-125 | A0A1U7XY92_NICSY; zinc finger protein 5-like | ||||
STRING | XP_009588286.1 | 1e-174 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6194 | 6 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27880.1 | 3e-11 | C2H2 family protein |