PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009588230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 189aa MW: 20794.8 Da PI: 5.2155 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 137.9 | 3.5e-43 | 33 | 131 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r+da++s+vyeA+ar+rdPvyG++g i +lq+q+++l+aela XP_009588230.1 33 PCAACKILRRRCVDKCVLAPYFPPTEPLKFTIAHRVFGASNIIKMLQELPEDQRTDAVNSMVYEANARIRDPVYGCAGAICQLQKQISELQAELA 127 7********************************************************************************************** PP DUF260 96 llke 99 +++ XP_009588230.1 128 KAQV 131 9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.247 | 32 | 133 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-43 | 33 | 130 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MECSDKTPAT CSSSSAGMMT PPPSPPSPVI LTPCAACKIL RRRCVDKCVL APYFPPTEPL 60 KFTIAHRVFG ASNIIKMLQE LPEDQRTDAV NSMVYEANAR IRDPVYGCAG AICQLQKQIS 120 ELQAELAKAQ VEMLNVQSQN ANLMSLICRE MSQNQQNNGS VCPDQQTHGN TSLFLDDNSI 180 YAAWEPLWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-44 | 24 | 135 | 2 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-44 | 24 | 135 | 2 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009588230.1 | 1e-140 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 6e-74 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A1S4B9N0 | 1e-137 | A0A1S4B9N0_TOBAC; LOB domain-containing protein 1-like | ||||
STRING | XP_009588230.1 | 1e-139 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 5e-76 | LOB domain-containing protein 1 |