PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009587560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 299aa MW: 32821.3 Da PI: 7.021 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.3 | 6.5e-12 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT eE+ l+ +v+++G g W+tI + R+ ++k++w+++ XP_009587560.1 5 KQKWTSEEEAALKAGVAKYGVGKWSTILKDPEfatvlRSRSNVDLKDKWRNL 56 79************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.05 | 1 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.71E-16 | 2 | 58 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-8 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-14 | 5 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.7E-8 | 5 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 5.09E-21 | 6 | 56 | No hit | No description |
SMART | SM00526 | 9.1E-11 | 123 | 188 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 2.18E-14 | 125 | 198 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PROSITE profile | PS51504 | 19.113 | 125 | 193 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 2.7E-14 | 128 | 194 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 4.5E-9 | 130 | 186 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MGAPKQKWTS EEEAALKAGV AKYGVGKWST ILKDPEFATV LRSRSNVDLK DKWRNLHVMA 60 NGLGSRHQVS RHQGRVVSKS VQPKQKHDDN SLLVSTAVEN DTEVLDPKPL ASSGDALEDV 120 GCEKTICRLD DLILEAIAKL KEPHGSRRNA ILSYIEEWYT APPNFERLLA ANLKALTDKG 180 RLIKVRHQYR IAPSRLSSGT KGGHLSFLMD GKEDSTMIEK NEIRIRTKAQ IDVELEQMKS 240 MTAEEAAAAA AQAVADAEAA IAEAERAARI AEAAEAEAEA AQCFHEVTLK ALQHQTIPV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT014455 | 6e-75 | BT014455.1 Lycopersicon esculentum clone 133802R, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009587559.1 | 0.0 | PREDICTED: single myb histone 5-like isoform X2 | ||||
Refseq | XP_009587560.1 | 0.0 | PREDICTED: single myb histone 5-like isoform X2 | ||||
Refseq | XP_009587561.1 | 0.0 | PREDICTED: single myb histone 5-like isoform X2 | ||||
Refseq | XP_009587562.1 | 0.0 | PREDICTED: single myb histone 5-like isoform X2 | ||||
Refseq | XP_016480326.1 | 0.0 | PREDICTED: single myb histone 5-like isoform X1 | ||||
Refseq | XP_016480327.1 | 0.0 | PREDICTED: single myb histone 5-like isoform X1 | ||||
Refseq | XP_016480328.1 | 0.0 | PREDICTED: single myb histone 5-like isoform X1 | ||||
Refseq | XP_016480329.1 | 0.0 | PREDICTED: single myb histone 5-like isoform X1 | ||||
Refseq | XP_016480330.1 | 0.0 | PREDICTED: single myb histone 5-like isoform X1 | ||||
Refseq | XP_018622557.1 | 0.0 | PREDICTED: single myb histone 5-like isoform X2 | ||||
TrEMBL | A0A1S4AUH2 | 0.0 | A0A1S4AUH2_TOBAC; single myb histone 5-like isoform X1 | ||||
STRING | XP_009587558.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 3e-66 | telomere repeat binding factor 1 |