PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009587236.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 344aa    MW: 38440.8 Da    PI: 6.4011
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009587236.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY30.85.7e-101011441858
                     -SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY  18 sefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                     +   r YYrC+ +   +C ++k v+rs+++p v+e++Y ++H +
  XP_009587236.1 101 NSRKREYYRCARRhlsKCIATKMVKRSDTEPPVFEVIYGESHSC 144
                     56689******98889**************************98 PP
2AP247.83.5e-15283331255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+W+AeIr+p     + +r++lg+f    +Aa a++aa+ +++g
  XP_009587236.1 283 TYRGVRQRP-WGKWAAEIREP-----NrARVWLGSFENSHDAAVAYDAAAYRFYG 331
                     69*******.**********8.....44***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007742.4E-595146IPR003657WRKY domain
PfamPF031061.6E-9101144IPR003657WRKY domain
SuperFamilySSF1182901.06E-8101146IPR003657WRKY domain
PROSITE profilePS508118.605101143IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.4E-9101146IPR003657WRKY domain
CDDcd000181.04E-19282340No hitNo description
Gene3DG3DSA:3.30.730.102.1E-28283340IPR001471AP2/ERF domain
SMARTSM003804.9E-30283344IPR001471AP2/ERF domain
PfamPF008472.1E-9283331IPR001471AP2/ERF domain
PROSITE profilePS5103223.288283339IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-19283340IPR016177DNA-binding domain
PRINTSPR003672.6E-12284295IPR001471AP2/ERF domain
PRINTSPR003672.6E-12321341IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGEENCWERE VVITELTKGR ELMCQLQKHF DPMKQDVCQY LSVEILSSYD KALSLLNGTA  60
LSVMSKGKQI INSAPSSSTA KLVSPHLPVD SSTKSSDRPS NSRKREYYRC ARRHLSKCIA  120
TKMVKRSDTE PPVFEVIYGE SHSCGQESKN QNEELPEPVL TTEIQSESAD IADMVSTPNN  180
SFNNSSTGVV FSSNSNSNSL FNIANSDFIS TPTSSPHPDW NFLSFDDTTR LTALLNDGPE  240
NVSCTYKGVD FISTPTSDHN LLLDDTTSLT TLSKSAPENA RCTYRGVRQR PWGKWAAEIR  300
EPNRARVWLG SFENSHDAAV AYDAAAYRFY GKNARLNFPE RYIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-22284341362ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009587236.10.0PREDICTED: probable WRKY transcription factor 41 isoform X2
TrEMBLA0A1S4CCS90.0A0A1S4CCS9_TOBAC; probable WRKY transcription factor 41 isoform X2
STRINGXP_009587235.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.11e-20ERF family protein