PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009587209.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 246aa MW: 28244.1 Da PI: 9.99 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.2 | 6.1e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+ +++q G+g +W + + ++g++R++k+c++rw++yl XP_009587209.1 14 RGPWSPEEDSKLKSYIEQNGTGgNWIALPPKIGLNRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 34.6 | 4.5e-11 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ Rt++++k++w++ XP_009587209.1 69 GGFSEEEDRIICSLYISIGSR-WSIIAAQLP-ERTDNDIKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.698 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.43E-25 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.1E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.0E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.20E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 20.528 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 3.4E-10 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.3E-10 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-22 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.46E-7 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MGRAPCCDKN NVKRGPWSPE EDSKLKSYIE QNGTGGNWIA LPPKIGLNRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDRIIC SLYISIGSRW SIIAAQLPER TDNDIKNYWN TRLKKKLFGK 120 QRQKQGSRKG KEINSNMVIS NNNNNNQFPC WPELPILQPI PYSNDEPRFN DHSSIRKLLI 180 KLGGKFSDED QPINEATNPQ YPMDNSLLMQ PIYQNIPINM ISSAPIDNVL GNXVYLPKII 240 ITRKRT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-24 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00089 | SELEX | Transfer from AT3G49690 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009587209.1 | 1e-179 | PREDICTED: transcription factor RAX3-like | ||||
Swissprot | Q9M2Y9 | 1e-78 | RAX3_ARATH; Transcription factor RAX3 | ||||
TrEMBL | A0A1S3ZE99 | 1e-152 | A0A1S3ZE99_TOBAC; transcription factor RAX3-like | ||||
TrEMBL | A0A1U7Y0B6 | 1e-152 | A0A1U7Y0B6_NICSY; transcription factor RAX3-like | ||||
STRING | XP_009587209.1 | 1e-179 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 5e-77 | myb domain protein 84 |
Publications ? help Back to Top | |||
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