PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009587069.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 490aa MW: 54274.8 Da PI: 5.2672

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009587069.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116.3	1.3e-36	143	202	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+st+tkfCyynn +++qPr+fC++C+ryWt+GG++rn+PvG+grrknk+ XP_009587069.1 143 PDKVLPCPRCNSTDTKFCYYNNNNVNQPRHFCRSCQRYWTAGGTMRNLPVGAGRRKNKNL 202 78999****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-28	140	200	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.1E-31	144	201	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.922	147	201	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	149	185	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence Send to blast
MTCESEIKLF GKILPMVVSG EYSGAGRSTI DNRSSTGFDV DQYLEDNRTS SSENDEGSES 60 IDYENQAADK DDIHKTRELS EDKLEEEDQN QMVEESENPK TSSESENSPK FPTDEDHQTV 120 KSSENENEPN NATDSQQTLL KKPDKVLPCP RCNSTDTKFC YYNNNNVNQP RHFCRSCQRY 180 WTAGGTMRNL PVGAGRRKNK NLASHYHHIS IPDDVLLASR IESPNGFHHP MLKPNGTVLS 240 FGPELPLCDS MASALNPAEK RAPNVIPNGF YKQEHRNSSC KGGENGDDCS KESSVMASNM 300 MVEGGNSKPH EAVMRNTNGF PSPAPCLHGV PFPFPWNAAV PMSAIYPFGF PMPFYPAPYW 360 NCSVPPWSNP WLSQPSRTEN EKASGSDPNS PLGKHSREGD DPECNEPVEQ KSSKRSILVP 420 KTLRIDDPDE AAKSSIWSTL GIKYDSASRG GFFKALQPKI DDKDHKATAS PELHANPAAL 480 SRSLSLQERT

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence Send to blast

MTCESEIKLF GKILPMVVSG EYSGAGRSTI DNRSSTGFDV DQYLEDNRTS SSENDEGSES  60
IDYENQAADK DDIHKTRELS EDKLEEEDQN QMVEESENPK TSSESENSPK FPTDEDHQTV  120
KSSENENEPN NATDSQQTLL KKPDKVLPCP RCNSTDTKFC YYNNNNVNQP RHFCRSCQRY  180
WTAGGTMRNL PVGAGRRKNK NLASHYHHIS IPDDVLLASR IESPNGFHHP MLKPNGTVLS  240
FGPELPLCDS MASALNPAEK RAPNVIPNGF YKQEHRNSSC KGGENGDDCS KESSVMASNM  300
MVEGGNSKPH EAVMRNTNGF PSPAPCLHGV PFPFPWNAAV PMSAIYPFGF PMPFYPAPYW  360
NCSVPPWSNP WLSQPSRTEN EKASGSDPNS PLGKHSREGD DPECNEPVEQ KSSKRSILVP  420
KTLRIDDPDE AAKSSIWSTL GIKYDSASRG GFFKALQPKI DDKDHKATAS PELHANPAAL  480
SRSLSLQERT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009587069.1	0.0	PREDICTED: cyclic dof factor 3-like
TrEMBL	A0A314KUW5	0.0	A0A314KUW5_NICAT; Cyclic dof factor 3
STRING	XP_009587069.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	7e-81	cycling DOF factor 3