PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009587051.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 490aa MW: 54085.6 Da PI: 6.4593 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.3 | 9.8e-31 | 258 | 316 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ XP_009587051.1 258 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGTHNHP 316 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.7E-33 | 242 | 318 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.89E-28 | 250 | 318 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.562 | 252 | 318 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-36 | 257 | 317 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-26 | 259 | 316 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 490 aa Download sequence Send to blast |
MNMNPREEQP SFSSADEKGV MLNEVDFFSD KRIKPMDVVI KKEDSHGENT TSTRSELLVN 60 TGLQLVSVNT GSDQSTVDDG ISSEIEDKRV KIELAQLQVE LGRMNAENQR LRGMLSQVSN 120 NYTALQMHLV TLMQQQQISR TENDHEIVEA KLEEKKQEKD GNMVPRQFLE LGPSEHMDEP 180 YSLNSHYSSS EERTVSESPR NNIEVTRHKG IGREETPESE SNKVPKLNSS NPIDQATEAT 240 MRKARVSVRA RSEAPMISDG CQWRKYGQKM AKGNPCPRAY YRCTMAVGCP VRKQVQRCAE 300 DRTILITTYE GTHNHPLPPA AMAMASTTSA AANMLLSGSM PSADGLMNSN FLARTILPSS 360 SSVATISASA PFPTITLDLT QNQNSISYYH QRTHPTAQFQ VPFPIGPHNP NFITSMPPPP 420 MPQVLHNQSK FSGLQVSQDI HHQPPQHALN QPSFSDTLNA ATAAITADPN FTAALAAAIS 480 SIITGSQKEQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 9e-22 | 244 | 320 | 1 | 76 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009587051.1 | 0.0 | PREDICTED: probable WRKY transcription factor 31 | ||||
Refseq | XP_018622409.1 | 0.0 | PREDICTED: probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 1e-151 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A1U7WFU6 | 0.0 | A0A1U7WFU6_NICSY; WRKY transcription factor 6-like | ||||
STRING | XP_009587051.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA945 | 24 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-124 | WRKY family protein |