PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009586806.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 409aa MW: 44417.3 Da PI: 8.2151

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009586806.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.7	5.6e-05	299	337	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq XP_009586806.1 299 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 337 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.28	287	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.51E-11	297	349	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.88E-5	297	341	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.9E-9	301	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MEPANLHHHH QQYHQLQFQD QLPLGISPNS SSSNSSYGDA TNTTHTWTPC TILNSAGTSL 60 SSYSSGAINT TNSSDPLLLR QQQQSGTNLV SMTQDLGFHW ANNSVSSQLV KQETSLDSYP 120 RFTQMLKSPS NIEERELSDM NAKLLFGTLS NSGCQMINTG LQLYPGDHNL LYSSNSSSST 180 NNRGKFSQIY PTINVSNLNI NQASYLANSS SLDMNLQPLD LVNTSRYGGS FSQPYGLTNH 240 FQHSSSESPV DSSSSISAFS NGVPEAKRTS NILEPKAPQN APKKSRVDSR ASCPPFKVRK 300 EKLGDRIAAL QQLVAPFGKT DTASVLMEAI GYIKFLQNQV ETLSVPYMKS SRNKTSRSLH 360 GGGGEMNGSE EVKRDLRSRG LCLVPLSCLT YMTDGGGGVW PPPNFAGGT

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MEPANLHHHH QQYHQLQFQD QLPLGISPNS SSSNSSYGDA TNTTHTWTPC TILNSAGTSL  60
SSYSSGAINT TNSSDPLLLR QQQQSGTNLV SMTQDLGFHW ANNSVSSQLV KQETSLDSYP  120
RFTQMLKSPS NIEERELSDM NAKLLFGTLS NSGCQMINTG LQLYPGDHNL LYSSNSSSST  180
NNRGKFSQIY PTINVSNLNI NQASYLANSS SLDMNLQPLD LVNTSRYGGS FSQPYGLTNH  240
FQHSSSESPV DSSSSISAFS NGVPEAKRTS NILEPKAPQN APKKSRVDSR ASCPPFKVRK  300
EKLGDRIAAL QQLVAPFGKT DTASVLMEAI GYIKFLQNQV ETLSVPYMKS SRNKTSRSLH  360
GGGGEMNGSE EVKRDLRSRG LCLVPLSCLT YMTDGGGGVW PPPNFAGGT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009586806.1	0.0	PREDICTED: transcription factor bHLH110
Refseq	XP_016460036.1	0.0	PREDICTED: transcription factor bHLH110-like
Swissprot	Q9SFZ3	6e-65	BH110_ARATH; Transcription factor bHLH110
TrEMBL	A0A1S3Z6M3	0.0	A0A1S3Z6M3_TOBAC; transcription factor bHLH110-like
STRING	XP_009586806.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7533	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	5e-64	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]