PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009586717.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 97aa MW: 11272.6 Da PI: 9.6434

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009586717.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.6	3.2e-09	6	53	3	47
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 WT++ +++ +a + + ++ +W+ a+ +g g+t++++k ++ k+ XP_009586717.1 6 TWTPQQNKKFENALAIYDKDtpdRWRNLAKAVGGGKTEEDVKIHYEKL 53 7********************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.539	1	54	IPR017877	Myb-like domain
SMART	SM00717	3.7E-7	3	56	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.84E-12	5	62	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.2E-4	5	59	IPR009057	Homeodomain-like
Pfam	PF00249	9.0E-7	6	53	IPR001005	SANT/Myb domain
CDD	cd00167	4.42E-5	6	54	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 97 aa Download sequence Send to blast
MASNSTWTPQ QNKKFENALA IYDKDTPDRW RNLAKAVGGG KTEEDVKIHY EKLVEDIKRI 60 ESGQVPLPKY NKANGGHNNK GYTFNDEEQR LRYFKLQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	3e-26	3	97	7	93	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009586717.1	1e-67	PREDICTED: protein RADIALIS-like 5
Swissprot	F4JVB8	1e-28	RADL1_ARATH; Protein RADIALIS-like 1
TrEMBL	A0A1S4B6C6	1e-65	A0A1S4B6C6_TOBAC; protein RADIALIS-like 5
STRING	XP_009586717.1	4e-67	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA202	24	231

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39250.1	5e-31	RAD-like 1

Publications ? help Back to Top
Zhang M, et al. ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development. Plant Physiol., 2013. 163(2): p. 713-20 [PMID:23922269]